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The map label for this gene is xerC [H]

Identifier: 119356400

GI number: 119356400

Start: 631578

End: 632564

Strand: Direct

Name: xerC [H]

Synonym: Cpha266_0564

Alternate gene names: 119356400

Gene position: 631578-632564 (Clockwise)

Preceding gene: 119356399

Following gene: 119356401

Centisome position: 20.15

GC content: 45.29

Gene sequence:

>987_bases
ATGAAAAAGCACGATGCTTATGGCACCACGGATTCAGGAGAGGATGGGTGCTACAGGGAGGCGGAACGTTTTCTTGGCTA
TCTGAAAACCAGCAAAAATGTTTCCCGGCACACCATTACAGCCTATCGAAACGATCTTGACCAGTTTTTTTCGTTCATGC
AGCGGCATCTCGAGCTTCAGCATATGAGCTTGTTTGATCCTGAACAGGTTACGGTTGCGTCGGTTCGACTTTTTATGGGC
GATCTTTTACAGCGGGGTCTGCAACCAAAGTCGATAGCAAGAAAACTTGCATCGGTAAAGAGCTTTTACCGTTATCTTCA
GGAAACAGGTGTAATCAAAAGCTCGGTACTTTCGTTGGTTTCAACCCCGAGGTACCCGCGTCATGTGCCTGGATTTCTAA
CCGAGCAGCAGACCGAAAAGATTTTCGAACAGGAAGATAGCGGGTTGTTCGGGTCAGATGATACGTTCGAGTTTCATCGC
GATATCTCCGTTCTTGAGATGCTCTATGGGTGCGGGCTGAGGATTTCAGAATTAATCGATCTTTGTCCGGATGATATCAA
TTTTCTTCAGGGATATGTGAAAATTACCGGAAAAGGGCAGAAGCAGCGAATTGTGCCTCTTGGTACCCAGGCCGCAGAGG
CAGTGAGAAAATATTTTGAAGTCCGGCGAAACTTCTTTAGAATAAATAAGTTGATGGATGAAAAGGAGCTGAACCATGTG
TTTGTTACGAAAAGAGGTAAAAAACTGTATCCTATGCTTGTTCAGAGGATCACGAAAAAGTACTTGATGTCGGTAACGGA
ACAGAAAGAGAAAAATCCTCACCTTCTTCGTCATACGTTTGCCACTCATCTTTTGAATAACGGTGCCGATCTCAAAAGCG
TAAGTGAGATGCTTGGTCACAGCAGCCTCGCGACCACAGAAATCTATACGCACGTTACCTTTGGCAGGTTAAAGGAGGTC
TATCGAAAAGCGCATCCTAAAGCATGA

Upstream 100 bases:

>100_bases
TGGAGAAAGATGGAGAAAAACCCTGTTTGAACAATTTTCTCATCAGGGACTTATCACTGTATTACATAAAAGAGAAAGAA
GAACTGATTTCAGTCAGCCT

Downstream 100 bases:

>100_bases
TGTATTTTACTTCGGAATTTCTTCTGTCCGGAGTTTTGTTCCTTCATTATGTTCACTTTATCTTATTGGAGGTTTTATGA
AGACTGCTGTTAACGATACG

Product: tyrosine recombinase XerC subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKKHDAYGTTDSGEDGCYREAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMG
DLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEKIFEQEDSGLFGSDDTFEFHR
DISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHV
FVTKRGKKLYPMLVQRITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEV
YRKAHPKA

Sequences:

>Translated_328_residues
MKKHDAYGTTDSGEDGCYREAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMG
DLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEKIFEQEDSGLFGSDDTFEFHR
DISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHV
FVTKRGKKLYPMLVQRITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEV
YRKAHPKA
>Mature_328_residues
MKKHDAYGTTDSGEDGCYREAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMG
DLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEKIFEQEDSGLFGSDDTFEFHR
DISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHV
FVTKRGKKLYPMLVQRITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTHVTFGRLKEV
YRKAHPKA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=309, Percent_Identity=33.9805825242718, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1790244, Length=309, Percent_Identity=31.3915857605178, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1790768, Length=193, Percent_Identity=25.9067357512953, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37930; Mature: 37930

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHDAYGTTDSGEDGCYREAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HMSLFDPEQVTVASVRLFMGDLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
STPRYPRHVPGFLTEQQTEKIFEQEDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELID
HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LCPDDINFLQGYVKITGKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHV
HCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
FVTKRGKKLYPMLVQRITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGH
EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC
SSLATTEIYTHVTFGRLKEVYRKAHPKA
CHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKHDAYGTTDSGEDGCYREAERFLGYLKTSKNVSRHTITAYRNDLDQFFSFMQRHLELQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
HMSLFDPEQVTVASVRLFMGDLLQRGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLV
HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
STPRYPRHVPGFLTEQQTEKIFEQEDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELID
HCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LCPDDINFLQGYVKITGKGQKQRIVPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHV
HCCCHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
FVTKRGKKLYPMLVQRITKKYLMSVTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGH
EEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC
SSLATTEIYTHVTFGRLKEVYRKAHPKA
CHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA