| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is gltX
Identifier: 119356265
GI number: 119356265
Start: 471873
End: 473381
Strand: Direct
Name: gltX
Synonym: Cpha266_0427
Alternate gene names: 119356265
Gene position: 471873-473381 (Clockwise)
Preceding gene: 119356261
Following gene: 119356266
Centisome position: 15.06
GC content: 48.51
Gene sequence:
>1509_bases ATGGTTGCTCAAAGGTATAGAACCAGGTTCGCTCCTTCCCCGACAGGGTATCTGCATGTAGGCGGATTGCGGACAGCCCT GTATAATTACCTGTTTGTTAAAAAGATGAAAGGTGACTTCGTGCTGAGAATTGAAGATACCGATCGGAGCCGCAGAGTTG AGGGGGCACAGCAAAATTTGCTTAAAACCCTTGAATGGGCGGGAATTGTGCCTGACGAAAGTCCTGAGCTCGGAGGTGAT TTCGGTCCATATATCCAGTCCGAAAGGCTTGAAATCTACAAGAAATATTGTGACGAGCTCCTTGAAGGGAAATATGCTTA TTACTGTTTCGCTACATCAGAGGAGCTTGAGGAGAATCGGCAGCTTCAGCTCAAGCAGGGGCTTCAGCCAAAATATAACA GAAAATGGCTGCCCGAAGAGATGGGGGGATCGATGCCTTCATCGGAAATAAGAAAGAAAATGGAGCAGAACGCCCCCTAT GTTATTCGCATGAAGGTGCCGGATTATGTTTCCGTCTGGTTTGAAGATCTTATCAGAGGGCCGGTCGAGTTTGATTCATC GACCATTGACGATCAGGTGCTGATGAAGTCCGACGGGTTTCCGACCTATCACTTTGCCAGTGTTATTGACGATCATCTCA TGGAGTTTACCCATATCATCAGGGGTGAAGAGTGGCTTCCTTCCATGCCGAAACATCTCCTGCTGTACGAGTTTTTCGGA TGGGAGCCTCCAAAATTTGCCCATCTTCCCCTGTTGCTCAATCCGGACCGATCAAAACTCAGCAAGCGTCAGGGTGACGT CGCCGTTGAGGACTATATTCGGAAAGGGTACAGTGCTGAGGCGATCGTGAATTTTGTTGCCATGCTCGGCTGGAACGAAG GCGAGGGAACCGAGCAGGAAGTATACAGCCTTGAACAGCTTGTTGAGAGGTTTTCGCTTGAACGAGTCGGCAAGGCCGGT GCCATATTCAATGTCGACAAGCTCAACTGGCTTGAAAAACAGTATATCAAAAGCCGTTCTGCCGATCGTATTATTGCCGT TATCAAGCCGTTGCTCATGGCGGAACTGGAAAAAAGGCCGACAGCTATGCATGAATCGGTTATTACCAGTGATCTGTATC TTGAGCAGGTCATAGAGCTGATGCGTGAGCGTGTCGGGTTTGAGCATGAATTCGTGACCTTTTCGCCATACTTTTTCTTT GACCCAGAGACTTACGAAGAGGAGGGAGTACGCAAAAGATGGACGGCCGAAACCAACACTCTTTTACGTGAGTTTGTAAC GGTTCTCGCATCTCTTGATGCTTTCACTGCCGAAGCGATTGAAACGGAGCTGAAGGCTTTTGTCGCACCCAAAGGGCTTA AAGCAGCGGCATTGATCCATCCTCTCAGGATTCTCTGTTCAGGGGTTAGTTTTGGACCAAGTCTCTATCATATGCTTGAG GTTCTTGGAAAAGATGCCGTTATTCGCCGGATTTCCAGGGGTATTGAAACGGTGGTCTGCCTCTCGTGA
Upstream 100 bases:
>100_bases GTGCTGTTATTTATGCTGCAAAAACCGGTGAGTTTTTTTAAATTCCCTCCTTCTGACCGTGATCGGCCCTTTATAATAAT AAACAGTACGGTATCACATT
Downstream 100 bases:
>100_bases ATAAATGATGATTGGCGGAGTTGCGGTTGAAGCGTTTTTGTTTTGACTTCATTGTAAAATTGCTTATTATAAGCGCAACT CTTAAGGACAGATAGCTCAG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS
Number of amino acids: Translated: 502; Mature: 502
Protein sequence:
>502_residues MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNLLKTLEWAGIVPDESPELGGD FGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENRQLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPY VIRMKVPDYVSVWFEDLIRGPVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLGWNEGEGTEQEVYSLEQLVERFSLERVGKAG AIFNVDKLNWLEKQYIKSRSADRIIAVIKPLLMAELEKRPTAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSPYFFF DPETYEEEGVRKRWTAETNTLLREFVTVLASLDAFTAEAIETELKAFVAPKGLKAAALIHPLRILCSGVSFGPSLYHMLE VLGKDAVIRRISRGIETVVCLS
Sequences:
>Translated_502_residues MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNLLKTLEWAGIVPDESPELGGD FGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENRQLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPY VIRMKVPDYVSVWFEDLIRGPVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLGWNEGEGTEQEVYSLEQLVERFSLERVGKAG AIFNVDKLNWLEKQYIKSRSADRIIAVIKPLLMAELEKRPTAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSPYFFF DPETYEEEGVRKRWTAETNTLLREFVTVLASLDAFTAEAIETELKAFVAPKGLKAAALIHPLRILCSGVSFGPSLYHMLE VLGKDAVIRRISRGIETVVCLS >Mature_502_residues MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNLLKTLEWAGIVPDESPELGGD FGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENRQLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPY VIRMKVPDYVSVWFEDLIRGPVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLGWNEGEGTEQEVYSLEQLVERFSLERVGKAG AIFNVDKLNWLEKQYIKSRSADRIIAVIKPLLMAELEKRPTAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSPYFFF DPETYEEEGVRKRWTAETNTLLREFVTVLASLDAFTAEAIETELKAFVAPKGLKAAALIHPLRILCSGVSFGPSLYHMLE VLGKDAVIRRISRGIETVVCLS
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI134288884, Length=498, Percent_Identity=36.5461847389558, Blast_Score=310, Evalue=1e-84, Organism=Escherichia coli, GI1788743, Length=498, Percent_Identity=32.5301204819277, Blast_Score=281, Evalue=5e-77, Organism=Escherichia coli, GI226510925, Length=311, Percent_Identity=30.8681672025724, Blast_Score=131, Evalue=1e-31, Organism=Escherichia coli, GI1786895, Length=361, Percent_Identity=22.7146814404432, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71993394, Length=498, Percent_Identity=37.14859437751, Blast_Score=293, Evalue=1e-79, Organism=Saccharomyces cerevisiae, GI6324540, Length=513, Percent_Identity=35.2826510721248, Blast_Score=304, Evalue=2e-83, Organism=Saccharomyces cerevisiae, GI6321192, Length=321, Percent_Identity=25.5451713395639, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24665321, Length=498, Percent_Identity=38.1526104417671, Blast_Score=340, Evalue=2e-93,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYE_CHLPD (A1BDK8)
Other databases:
- EMBL: CP000492 - RefSeq: YP_910909.1 - ProteinModelPortal: A1BDK8 - SMR: A1BDK8 - STRING: A1BDK8 - GeneID: 4570981 - GenomeReviews: CP000492_GR - KEGG: cph:Cpha266_0427 - NMPDR: fig|290317.7.peg.438 - eggNOG: COG0008 - HOGENOM: HBG628189 - OMA: MAHIPLI - ProtClustDB: PRK01406 - GO: GO:0005737 - HAMAP: MF_00022_B - InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 - Gene3D: G3DSA:1.10.1160.10 - Gene3D: G3DSA:3.40.50.620 - Gene3D: G3DSA:1.10.10.350 - PANTHER: PTHR10119 - PRINTS: PR00987 - TIGRFAMs: TIGR00464
Pfam domain/function: PF00749 tRNA-synt_1c; SSF48163 tRNA-synt_bind
EC number: =6.1.1.17
Molecular weight: Translated: 57877; Mature: 57877
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 262-262
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNL CCCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH LKTLEWAGIVPDESPELGGDFGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENR HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHH QLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPYVIRMKVPDYVSVWFEDLIRG HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC PVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG CCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLGWNEGEGTEQE CCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH VYSLEQLVERFSLERVGKAGAIFNVDKLNWLEKQYIKSRSADRIIAVIKPLLMAELEKRP HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC TAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSPYFFFDPETYEEEGVRKRWTAETNT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHHHCHHHHHCHHHHH LLREFVTVLASLDAFTAEAIETELKAFVAPKGLKAAALIHPLRILCSGVSFGPSLYHMLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH VLGKDAVIRRISRGIETVVCLS HHCHHHHHHHHHHCCCEEEECC >Mature Secondary Structure MVAQRYRTRFAPSPTGYLHVGGLRTALYNYLFVKKMKGDFVLRIEDTDRSRRVEGAQQNL CCCHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH LKTLEWAGIVPDESPELGGDFGPYIQSERLEIYKKYCDELLEGKYAYYCFATSEELEENR HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHH QLQLKQGLQPKYNRKWLPEEMGGSMPSSEIRKKMEQNAPYVIRMKVPDYVSVWFEDLIRG HHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC PVEFDSSTIDDQVLMKSDGFPTYHFASVIDDHLMEFTHIIRGEEWLPSMPKHLLLYEFFG CCCCCCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHC WEPPKFAHLPLLLNPDRSKLSKRQGDVAVEDYIRKGYSAEAIVNFVAMLGWNEGEGTEQE CCCCCCCCCCEEECCCHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHH VYSLEQLVERFSLERVGKAGAIFNVDKLNWLEKQYIKSRSADRIIAVIKPLLMAELEKRP HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC TAMHESVITSDLYLEQVIELMRERVGFEHEFVTFSPYFFFDPETYEEEGVRKRWTAETNT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECCCCHHHHCHHHHHCHHHHH LLREFVTVLASLDAFTAEAIETELKAFVAPKGLKAAALIHPLRILCSGVSFGPSLYHMLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH VLGKDAVIRRISRGIETVVCLS HHCHHHHHHHHHHCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA