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The map label for this gene is rbfA

Identifier: 119356209

GI number: 119356209

Start: 414983

End: 415333

Strand: Direct

Name: rbfA

Synonym: Cpha266_0370

Alternate gene names: 119356209

Gene position: 414983-415333 (Clockwise)

Preceding gene: 119356208

Following gene: 119356210

Centisome position: 13.24

GC content: 42.45

Gene sequence:

>351_bases
ATGTCAATCAGGACTGAAAAAGTTGCCTCTCTGCTTCAGCAGGAACTTGGTATGATTCTGGAAAAAGAGTTTCCCCGCGG
CGGGCCAATTCTGACGGTTGTCGAGGTGAAAGTTACGGCGGATCTCGGTATTGCGAAGGTATATGTTTCGGTTATCGGAT
CAGCAAAAGAGCAGGCAGATACCATTGAATATCTTCAGCAAGAGAAGAAAAATATAAGAAAAATTCTCTCATCGAAAATT
CGCCATCATTTCAGGAGAATTCCCGAGCTTGAGTTTTATCAGGATCGTTTATATGAAAAGGCCGACAGAATAGAGCAGTT
GCTAAAAGAGGTCAGAAAAGAACAGGAGTAA

Upstream 100 bases:

>100_bases
CAGTCTGAAAAATTATGACGATATCAAGGTTGGCGATATTGTTGAGGCTTATAAGATTGTCGAGAAAAAAAGAAAACTCT
GAACGGAAAGGACGTGAGTG

Downstream 100 bases:

>100_bases
TCTTGGAGATGGATCAGGAAGGCTTGAAAAGCGTTGCAGGAACTTTGCACACTCCTGAAGTTCATGAGGATTCAGGGTGT
TTCCATCTGGTGGACAAGCC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGIAKVYVSVIGSAKEQADTIEYLQQEKKNIRKILSSKI
RHHFRRIPELEFYQDRLYEKADRIEQLLKEVRKEQE

Sequences:

>Translated_116_residues
MSIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGIAKVYVSVIGSAKEQADTIEYLQQEKKNIRKILSSKI
RHHFRRIPELEFYQDRLYEKADRIEQLLKEVRKEQE
>Mature_115_residues
SIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGIAKVYVSVIGSAKEQADTIEYLQQEKKNIRKILSSKIR
HHFRRIPELEFYQDRLYEKADRIEQLLKEVRKEQE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=117, Percent_Identity=35.042735042735, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_CHLPD (A1BDF2)

Other databases:

- EMBL:   CP000492
- RefSeq:   YP_910853.1
- ProteinModelPortal:   A1BDF2
- SMR:   A1BDF2
- STRING:   A1BDF2
- GeneID:   4569348
- GenomeReviews:   CP000492_GR
- KEGG:   cph:Cpha266_0370
- NMPDR:   fig|290317.7.peg.377
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   QRIEMRR
- ProtClustDB:   CLSK637234
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13554; Mature: 13423

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGIAKVYVSVIGSAKEQAD
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
TIEYLQQEKKNIRKILSSKIRHHFRRIPELEFYQDRLYEKADRIEQLLKEVRKEQE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIRTEKVASLLQQELGMILEKEFPRGGPILTVVEVKVTADLGIAKVYVSVIGSAKEQAD
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
TIEYLQQEKKNIRKILSSKIRHHFRRIPELEFYQDRLYEKADRIEQLLKEVRKEQE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA