| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is yibD [C]
Identifier: 119356190
GI number: 119356190
Start: 387683
End: 390667
Strand: Reverse
Name: yibD [C]
Synonym: Cpha266_0351
Alternate gene names: 119356190
Gene position: 390667-387683 (Counterclockwise)
Preceding gene: 119356191
Following gene: 119356189
Centisome position: 12.47
GC content: 31.62
Gene sequence:
>2985_bases ATGATCAACAAATCTCTTTTTTTAAAACCAGCAAGAATTATTGAACCAATCGGTTGGTTAGGGCATATTCCATTCTCATT CTGGATTGTAGAAGCGGCGAAGCCCCAAGTAATTGTTGAACTTGGTACTCATTCAGGAAATTCATATTTCTCTTTTTGCC AAAGCGTCAAGTATAACAGCTTGCCTACACTCTGTTATGCAATATATTCATGTTTGAATAATGAACAAACCGAATTATAT AATGCCGATATTATTGATTCATTATTAACCTATAATAATGAACACTACCAGGCTTTTTCAAATGTTACTGGTAACACTTA TTATAATGCCCTTTCTTTTTTTGAAGACGCTTCTATTGACATTTTACATATAAATAGCGAAGGGACTTATACATCAGTAG TAAATTTATTTAATGCTTGGATTCCAAAATTATCCTCTTCTGGAATAGTACTTTTTGATAATATTAATGCTTCAGAAAAT AATACCGAAGTTTATAAATTATGGGGATATGTCAAAAACATATACCCAAACCTTACTATTGAGCATTCCAATGGGCTGGG AGTTATTTTTACTGGTAATATGTATAATGATAATATTAATGAATTCATTAAAACTATTGAAACAGAGGCTAATAGAAATA TAATAGGAACTCTATTTGAAAAGATTGGCAACACAATAGAAATGGATTTTCAAATAAGACGCCTATTAAATTCCTTAAAA GAAGCTGATACAATGATCGATATGCTGAATCAAACAATCAGTAATCGAGAGACTGTAATCAACAAACTTATTCAAACAAT TGAAAAAAACGATGAAACAATAAAAAGTTTTAGTAAAAAACATGATTTTGTGAAAGTGAAACCTTTGCGAAAACTAAAAA AATCAATAAGAAAAAGAGCTCATACACTAAGTAAGCTTTTTTTCAAAGTCGAAGATAAAAATCATCTCAGTGTAAATACG CATAACAGTAATGCAGAATGGTTTCTTAAAGAATATAAAAATATAGCATGTTCAGATAATAAACATTGTTTTCATTATAA ATTCGGCATTATTGATCATCTTGCCGAAAACAATTCTTTCTTTAAAGAATCGAAACCGACTGCTTCTATAATTATTCCTG TTTATGGAAATATTTCATACACAATAAAATGTATTGAGTCACTATTAAATTTACCTGACTCAACATCCTTTGAAATCATA ATAATCGATGATCACTCCCCAGATAACTCATATGAAACACTTAATAAAATCAGTCAAATAAAATTAATAAGAAACGACTG CAATAAAGGATTTATACATTCATGTAATTCAGGCGCATCTCTTGCAACTGGTGAATATCTGATATTTCTCAATAATGATA CAGAAGTACTAAATGCCTGGCTCGATAGTCTTATAGCTCCATTTATAATACATGATAATGTCGGCTTAGTAGGTTCTCAA ATCATATATCCTGATGGGCGTTTACAGGAAGCTGGCGGAGTAATCTTGTCAGATGGCAGTGGATTAAATTACGGAAGATT AAGTGATCCAAATAAACCAGAATACAATTTCCTGAGGGAAGTAGATTATTGCTCGGGATGCTCAATTGCAATAAAAAAAT CTTTATTCGATAGCATTGGAGGATTTGACACTCTATTTATCCCTGCTTATTATGAGGATACAGACATAGCATTTACAGTT CGGAAAATGGGATATAAAGTACTATATCAACCAGCATCAAAGGTAATTCATCATGAAGGGATTACTTCTGGTACTGATTT GAAAAAAGGAGTTAAAAAATTTCAAAATACAAATAAAATTAAATTTTACAACAAATGGGAAACACAATTAAAATCTCACA ATATCTTACCAGATAATTATAGCTTAGCTAAGTGCAAGTATTATAAAGATACTATATTATTTATAGATGCATGCACTCCA ACGCCTGATAAAGATTCTGGCTCAGTTGATGCTTTTTTTCATCAATATATTTTCACAAAATTAAATTTTAAGGTAACATT CATACCAGATAACCTGATTTTTCTTGATGGTTACACACAGGTTTTACAACAACTTGGTATTGAATGCCTGTACAAACCAC ACATAACATCTATAGAAAATTTTTTAAAAACCAGAGGTGCTGAATTTAAATACGTTGTACTTTCAAGAGTAGGTATTGCA GTAAAACACATTAACGCAATAAAGAAATACTGCCCTAACAGCATTTTAATATTTAACCTTGTTGATATTCACTATATTCG AGAAGCACGACAAGCAAGAACGCTGAATTCCATCGAACTTCTTCATAAAGCAAAAAAAACCAAAGCTACTGAACTCAGTA TCATGAAAAGATCAGATGTGAATATCATTATTAGTGAGTCGGAAGTCAAGCATCTTAGCAAGATCGATCCAGAATTAAAA CTTTTTAATCTTCCGTTAATTCTTGACATGCATCAGCGCACCAATAATTTTGAAAACAGAAAAAACATCATGTTTATTGG CGGATTTCAACATTCCCCCAATGTAGATGCAGTACTGTACTTTTCCAGGGAGATCTGGCCATTGGTCAAAACCAGGTTAG TTGATGCTCACTTTATTATCATCGGTAGTGAAATGCCAAATGAAATAATAAATCTGCATAATCAAAATGGAATTCTAAGC ATTGGATATATTGAAGATTTATCGCCTTTCTTCAACTCATGTAAATTTTCTATAGCTCCCTTGAGATATGGAGCAGGGCA AAAAGGTAAGCTTGCTCGAAGTGGCAGCTATGGACTTCCCTCAGTTGCAACAAGTATAGCAGTTGAAGGAATGGGCCTTA AACATGAAAAGCATATACTGATTGCAGATAAACCTGATGATTTTGCAAATTCCATTGAAAGACTTTATCATGACAGTATA CTTTGGGAAAAGCTTTCAAAAAATATATATGATTACACTAATAGTGAGTACTCAATTACAAAAGGAATAAGCAGAATAAG CAATTTAATTCACGCTTTAAATTAG
Upstream 100 bases:
>100_bases CATTATTCGGGATATAATTTACCATCAATGATTATCACCAAACCATATATCAAACTAAATACTTTCTATACACACTATAC CTGATATCTTAGCATAAACA
Downstream 100 bases:
>100_bases TCATATCTTCTGGAGTTCATAAAATGCAATTATTGTCATTAGTTATTCCTTGCTACAACGAGGAAGCAGTGATTGATGAA ACTATTAAACGACTTAAAAC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 994; Mature: 994
Protein sequence:
>994_residues MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTHSGNSYFSFCQSVKYNSLPTLCYAIYSCLNNEQTELY NADIIDSLLTYNNEHYQAFSNVTGNTYYNALSFFEDASIDILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASEN NTEVYKLWGYVKNIYPNLTIEHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTLFEKIGNTIEMDFQIRRLLNSLK EADTMIDMLNQTISNRETVINKLIQTIEKNDETIKSFSKKHDFVKVKPLRKLKKSIRKRAHTLSKLFFKVEDKNHLSVNT HNSNAEWFLKEYKNIACSDNKHCFHYKFGIIDHLAENNSFFKESKPTASIIIPVYGNISYTIKCIESLLNLPDSTSFEII IIDDHSPDNSYETLNKISQIKLIRNDCNKGFIHSCNSGASLATGEYLIFLNNDTEVLNAWLDSLIAPFIIHDNVGLVGSQ IIYPDGRLQEAGGVILSDGSGLNYGRLSDPNKPEYNFLREVDYCSGCSIAIKKSLFDSIGGFDTLFIPAYYEDTDIAFTV RKMGYKVLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKIKFYNKWETQLKSHNILPDNYSLAKCKYYKDTILFIDACTP TPDKDSGSVDAFFHQYIFTKLNFKVTFIPDNLIFLDGYTQVLQQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIA VKHINAIKKYCPNSILIFNLVDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDVNIIISESEVKHLSKIDPELK LFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLYFSREIWPLVKTRLVDAHFIIIGSEMPNEIINLHNQNGILS IGYIEDLSPFFNSCKFSIAPLRYGAGQKGKLARSGSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSI LWEKLSKNIYDYTNSEYSITKGISRISNLIHALN
Sequences:
>Translated_994_residues MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTHSGNSYFSFCQSVKYNSLPTLCYAIYSCLNNEQTELY NADIIDSLLTYNNEHYQAFSNVTGNTYYNALSFFEDASIDILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASEN NTEVYKLWGYVKNIYPNLTIEHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTLFEKIGNTIEMDFQIRRLLNSLK EADTMIDMLNQTISNRETVINKLIQTIEKNDETIKSFSKKHDFVKVKPLRKLKKSIRKRAHTLSKLFFKVEDKNHLSVNT HNSNAEWFLKEYKNIACSDNKHCFHYKFGIIDHLAENNSFFKESKPTASIIIPVYGNISYTIKCIESLLNLPDSTSFEII IIDDHSPDNSYETLNKISQIKLIRNDCNKGFIHSCNSGASLATGEYLIFLNNDTEVLNAWLDSLIAPFIIHDNVGLVGSQ IIYPDGRLQEAGGVILSDGSGLNYGRLSDPNKPEYNFLREVDYCSGCSIAIKKSLFDSIGGFDTLFIPAYYEDTDIAFTV RKMGYKVLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKIKFYNKWETQLKSHNILPDNYSLAKCKYYKDTILFIDACTP TPDKDSGSVDAFFHQYIFTKLNFKVTFIPDNLIFLDGYTQVLQQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIA VKHINAIKKYCPNSILIFNLVDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDVNIIISESEVKHLSKIDPELK LFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLYFSREIWPLVKTRLVDAHFIIIGSEMPNEIINLHNQNGILS IGYIEDLSPFFNSCKFSIAPLRYGAGQKGKLARSGSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSI LWEKLSKNIYDYTNSEYSITKGISRISNLIHALN >Mature_994_residues MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTHSGNSYFSFCQSVKYNSLPTLCYAIYSCLNNEQTELY NADIIDSLLTYNNEHYQAFSNVTGNTYYNALSFFEDASIDILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASEN NTEVYKLWGYVKNIYPNLTIEHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTLFEKIGNTIEMDFQIRRLLNSLK EADTMIDMLNQTISNRETVINKLIQTIEKNDETIKSFSKKHDFVKVKPLRKLKKSIRKRAHTLSKLFFKVEDKNHLSVNT HNSNAEWFLKEYKNIACSDNKHCFHYKFGIIDHLAENNSFFKESKPTASIIIPVYGNISYTIKCIESLLNLPDSTSFEII IIDDHSPDNSYETLNKISQIKLIRNDCNKGFIHSCNSGASLATGEYLIFLNNDTEVLNAWLDSLIAPFIIHDNVGLVGSQ IIYPDGRLQEAGGVILSDGSGLNYGRLSDPNKPEYNFLREVDYCSGCSIAIKKSLFDSIGGFDTLFIPAYYEDTDIAFTV RKMGYKVLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKIKFYNKWETQLKSHNILPDNYSLAKCKYYKDTILFIDACTP TPDKDSGSVDAFFHQYIFTKLNFKVTFIPDNLIFLDGYTQVLQQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIA VKHINAIKKYCPNSILIFNLVDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDVNIIISESEVKHLSKIDPELK LFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLYFSREIWPLVKTRLVDAHFIIIGSEMPNEIINLHNQNGILS IGYIEDLSPFFNSCKFSIAPLRYGAGQKGKLARSGSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSI LWEKLSKNIYDYTNSEYSITKGISRISNLIHALN
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 113148; Mature: 113148
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTHSGNSYFSFCQSVKYNS CCCCCCCCCCHHHHCCCCHHHCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCC LPTLCYAIYSCLNNEQTELYNADIIDSLLTYNNEHYQAFSNVTGNTYYNALSFFEDASID CHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCEE ILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASENNTEVYKLWGYVKNIYPNLTI EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE EHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTLFEKIGNTIEMDFQIRRLLNSLK ECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECHHHHHHHHHHH EADTMIDMLNQTISNRETVINKLIQTIEKNDETIKSFSKKHDFVKVKPLRKLKKSIRKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHH HTLSKLFFKVEDKNHLSVNTHNSNAEWFLKEYKNIACSDNKHCFHYKFGIIDHLAENNSF HHHHHHHEEECCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCC FKESKPTASIIIPVYGNISYTIKCIESLLNLPDSTSFEIIIIDDHSPDNSYETLNKISQI CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH KLIRNDCNKGFIHSCNSGASLATGEYLIFLNNDTEVLNAWLDSLIAPFIIHDNVGLVGSQ HHHHHCCCCCCEECCCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCEEEECCCCCCCCE IIYPDGRLQEAGGVILSDGSGLNYGRLSDPNKPEYNFLREVDYCSGCSIAIKKSLFDSIG EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHC GFDTLFIPAYYEDTDIAFTVRKMGYKVLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKI CCCEEEEEEEECCCCCEEEEHHCCHHEEECHHHHHHHHCCCCCCCHHHHHHHHHCCCCCE KFYNKWETQLKSHNILPDNYSLAKCKYYKDTILFIDACTPTPDKDSGSVDAFFHQYIFTK EEEEHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHE LNFKVTFIPDNLIFLDGYTQVLQQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIA EEEEEEEECCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEHHHHHHHH VKHINAIKKYCPNSILIFNLVDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDV HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCC NIIISESEVKHLSKIDPELKLFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLY EEEEECHHHHHHHHCCCCEEEEECCEEEEEHHHCCCCCCCCCEEEEECCCCCCCCCEEEE FSREIWPLVKTRLVDAHFIIIGSEMPNEIINLHNQNGILSIGYIEDLSPFFNSCKFSIAP ECHHHHHHHHHHHEEEEEEEECCCCCHHHHHCCCCCCEEEECCHHHHHHHHHCCEEEEEE LRYGAGQKGKLARSGSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSI EECCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH LWEKLSKNIYDYTNSEYSITKGISRISNLIHALN HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MINKSLFLKPARIIEPIGWLGHIPFSFWIVEAAKPQVIVELGTHSGNSYFSFCQSVKYNS CCCCCCCCCCHHHHCCCCHHHCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHCCCCC LPTLCYAIYSCLNNEQTELYNADIIDSLLTYNNEHYQAFSNVTGNTYYNALSFFEDASID CHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCEE ILHINSEGTYTSVVNLFNAWIPKLSSSGIVLFDNINASENNTEVYKLWGYVKNIYPNLTI EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEE EHSNGLGVIFTGNMYNDNINEFIKTIETEANRNIIGTLFEKIGNTIEMDFQIRRLLNSLK ECCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCEEEECHHHHHHHHHHH EADTMIDMLNQTISNRETVINKLIQTIEKNDETIKSFSKKHDFVKVKPLRKLKKSIRKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHH HTLSKLFFKVEDKNHLSVNTHNSNAEWFLKEYKNIACSDNKHCFHYKFGIIDHLAENNSF HHHHHHHEEECCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCC FKESKPTASIIIPVYGNISYTIKCIESLLNLPDSTSFEIIIIDDHSPDNSYETLNKISQI CCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH KLIRNDCNKGFIHSCNSGASLATGEYLIFLNNDTEVLNAWLDSLIAPFIIHDNVGLVGSQ HHHHHCCCCCCEECCCCCCCEECCCEEEEECCCHHHHHHHHHHHHCCEEEECCCCCCCCE IIYPDGRLQEAGGVILSDGSGLNYGRLSDPNKPEYNFLREVDYCSGCSIAIKKSLFDSIG EECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHC GFDTLFIPAYYEDTDIAFTVRKMGYKVLYQPASKVIHHEGITSGTDLKKGVKKFQNTNKI CCCEEEEEEEECCCCCEEEEHHCCHHEEECHHHHHHHHCCCCCCCHHHHHHHHHCCCCCE KFYNKWETQLKSHNILPDNYSLAKCKYYKDTILFIDACTPTPDKDSGSVDAFFHQYIFTK EEEEHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHE LNFKVTFIPDNLIFLDGYTQVLQQLGIECLYKPHITSIENFLKTRGAEFKYVVLSRVGIA EEEEEEEECCCEEEECCHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCEEEEHHHHHHHH VKHINAIKKYCPNSILIFNLVDIHYIREARQARTLNSIELLHKAKKTKATELSIMKRSDV HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCC NIIISESEVKHLSKIDPELKLFNLPLILDMHQRTNNFENRKNIMFIGGFQHSPNVDAVLY EEEEECHHHHHHHHCCCCEEEEECCEEEEEHHHCCCCCCCCCEEEEECCCCCCCCCEEEE FSREIWPLVKTRLVDAHFIIIGSEMPNEIINLHNQNGILSIGYIEDLSPFFNSCKFSIAP ECHHHHHHHHHHHEEEEEEEECCCCCHHHHHCCCCCCEEEECCHHHHHHHHHCCEEEEEE LRYGAGQKGKLARSGSYGLPSVATSIAVEGMGLKHEKHILIADKPDDFANSIERLYHDSI EECCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH LWEKLSKNIYDYTNSEYSITKGISRISNLIHALN HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]