Definition Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
Accession NC_008639
Length 3,133,902

Click here to switch to the map view.

The map label for this gene is ycdJ [C]

Identifier: 119356144

GI number: 119356144

Start: 335760

End: 336683

Strand: Reverse

Name: ycdJ [C]

Synonym: Cpha266_0302

Alternate gene names: 119356144

Gene position: 336683-335760 (Counterclockwise)

Preceding gene: 119356150

Following gene: 119356143

Centisome position: 10.74

GC content: 47.84

Gene sequence:

>924_bases
ATGAGTTATTTAGCATCTTCACGTTGCAAACTCTACTATGAGGACAGCGCGGAAGCCAATCCCGCACATCTTGACAAACC
GGCGGTACTGTTTGTCAACGGGTGGGCTATTTCGTCACGATACTGGAAACCTCTGGTTCAAGCGCTGTCCGGAAGTTTCC
GCTGCATAATCTATGACCAGAGCGGTACGGGCAAAACGCTGATCAAGGGGCATAATCCGTCGTTTACCATACAGGGTTTT
GCCGATGAAGCTGGAGAACTGATTGAACATCTCGGGCTCAACAAGTCAAGAAACCTGCATATCGTCGGACACTCGATGGG
AGGAATGGTGGCTACGGAACTCTCCCTTCGTTATAAGACAGCTCTTGTTTCCTCAGCAATCATAGCCTGCGGAATTTTTG
AGGAAACCGCATTTACATCCTTCGGGCTTTTCTTTCTTGGCGGTCTGATTGATGTTTCCATGAATTTCCGGAATGTTTTT
CAAAGCGAGCCTTTTCGATCCATGTTTATAAAACGGGCTGCGACAAAGGAGATCGCCAAGGAGTACGGAGATATCATCAT
CGAGGATTTCACACAGTCAGACAAGGATGCAACCAACGCCGCAGGTAAATTTTCTATCGATCCGGAAGCGCTCAGAGCCT
ATACCCGTCATGTCATCGAGATTGCGTCCCCGGTTCTCTGCTGTGTAGGTATGGCTGACCATACTATCCCCCCGGAAGGA
ACCATAACCCTGTTTGAAACCCGAAAAGCCCGATCTTCGGCACCAACAACCCTGGTACAGTTTATGAATCTCGGCCACTT
GCCGATGCTTGAAGACACCGATAATTTTGCTGAAGCGCTGATAAAACACTTTGACTCTGCCAGAAAATTTCATGAAAACA
ACTCAACCGAACCTGCTCGTTGCAAACAATACCAGATTTCATGA

Upstream 100 bases:

>100_bases
CTCTTTTGATCGGGAGCGCTTAAGGGAATGAAGCGATAAGAAAAGTTATTATTGTTATATATTGAAGTTTTGTTTTCAGC
TTAACAATTCTGTACTGACC

Downstream 100 bases:

>100_bases
TTTTCATTACCGACTCACCCATGCCGACCTATGATAACCTTAAGAACGACTGTTACCGTGAATACTACTTTTTTTAAAAA
ATCTTTTATTACTCTTGCCG

Product: alpha/beta hydrolase fold

Products: NA

Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Esterase; Proline Iminopeptidase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold-Containing Protein

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGF
ADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVF
QSEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG
TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS

Sequences:

>Translated_307_residues
MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGF
ADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVF
QSEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG
TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS
>Mature_306_residues
SYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQSGTGKTLIKGHNPSFTIQGFA
DEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKTALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQ
SEPFRSMFIKRAATKEIAKEYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEGT
ITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPARCKQYQIS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34000; Mature: 33869

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQ
CCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHHCCCEEEEEEEC
SGTGKTLIKGHNPSFTIQGFADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKT
CCCCCEEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHH
ALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQSEPFRSMFIKRAATKEIAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG
HHCCEEEEHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPAR
CEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
CKQYQIS
CCCCCCC
>Mature Secondary Structure 
SYLASSRCKLYYEDSAEANPAHLDKPAVLFVNGWAISSRYWKPLVQALSGSFRCIIYDQ
CCCCCCCCEEEECCCCCCCCCCCCCCEEEEEECEEECHHHHHHHHHHHCCCEEEEEEEC
SGTGKTLIKGHNPSFTIQGFADEAGELIEHLGLNKSRNLHIVGHSMGGMVATELSLRYKT
CCCCCEEEECCCCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHH
ALVSSAIIACGIFEETAFTSFGLFFLGGLIDVSMNFRNVFQSEPFRSMFIKRAATKEIAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EYGDIIIEDFTQSDKDATNAAGKFSIDPEALRAYTRHVIEIASPVLCCVGMADHTIPPEG
HHCCEEEEHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
TITLFETRKARSSAPTTLVQFMNLGHLPMLEDTDNFAEALIKHFDSARKFHENNSTEPAR
CEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH
CKQYQIS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA