Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 119355883

GI number: 119355883

Start: 32395

End: 34254

Strand: Direct

Name: secD [H]

Synonym: Cpha266_0033

Alternate gene names: 119355883

Gene position: 32395-34254 (Clockwise)

Preceding gene: 119355882

Following gene: 119355884

Centisome position: 1.03

GC content: 50.65

Gene sequence:

>1860_bases
ATGAAAAATAAACAGTTCCCTCTTTTTCTTCTGCTTGCGGTTACGGCGATCTCTCTCTGGTCTTTATGGCCTACCTGGCG
TGATTACTCCCTGACAAAACAGATTGAGCGCTTTTCATCCAGCGAAGACAGCCTGAAGTTCAGCCTTGCGCATAGGGATG
AAATTGAAAATGCCCGCCGTAAAAGCCTGAAACTCGGTCTCGATCTGAAAGGAGGCATGCACCTTGTCATGGAGGTCGAT
CAGATCGATCTTTTTATGCAGAAAGCCTGGAACAAGGACGCCAGGTTTTTTGAGCTGATGGATAAGGTGAAACAAAAATC
GGTGACAAGCGATGCACGGGTCATTGATTTGATTGTGAATGAGTTCACAAAAGAGAACATTCGGCTGAGTCGATATTTTT
ACGATATACGTAACTCTGATAAAGAGATCGTCGGGAAACTGGAAAAAGAGTCGGAGGACGCCCTTCTCCGTGCCAAAGAG
ATTATCAGAAACCGTATCGACCAGTATGGTGTCGCAGAGCCGGTGATAACCACTCAGGGAAGCAGGAGAATTATTATCGA
ACTTGCGGGCGTTTCCGATGAGAACCGGGTGAGAAATCTTCTTAAAGGTACGGCAAAACTCGAGTTCAAGCTTCTTCGCG
ATCCCGATATGCTTCTCAGGGCCCTTGACAGAGTGAACAGCGCGCTTGTGCAAGCCAGCGTCCAGAAACCAGTCGTTCCG
GATTCCCTTGCCGTAAAGGACTCGGCGGCAACGGCCTCTCCTGCGGTTGCTCCGCCTCTCGATGCCACAGCGTCAAAACA
GGCAAAAACGGCCGGCCCTCTTTATGACGTTATCGGCGTTTTACCTAATGGTACCGTTTTTACTCCCGAACAGTCAAGAG
AGTTCGTTTTGACGTTGTTGCAACGTGCTGATGTTCAGGCGCTCCTGCCGCAAGACAGCGAGCTGCTTCTTTCGGCTAAA
CCGGAGGTGGGAGAGAAAGGCGAGAAGTACTATCCGATCTATCTGGTAAAGAAAACTGCCGAACTGACCGGGGGCGTTAT
CACGGAAGCCAAGGCGACGTTTGGATCCGAAGGGGTGCAGCCAGAGGTCATGATGTCAATGAATTCTGATGGTACAGGCA
AATGGGCTCGTATTACCGGTGCAAATATCGGAAAACGAATTGCCATCGTGCTCGATGGCGCCGTTTACAGCGCTCCGGTT
GTTCAGTCGAAGATTCCTAACGGCAATTCGGTGATCAACGGAATTGAGAGTCTTGAAGAGGCGAAGGATCTGGAAATTGT
TCTTAAGGCGGGAGCTCTGCCCGCACCGGTTAGAATTATGGAAGAACGGACGGTTGGCCCCTCCCTTGGTGCCGACTATA
TACGGGCGGGGATGCTCTCTCTCCTGTGGGGATTCTGCGCAGTGTCAATCTTCATGCTGGTGTACTACAGGAAGGCCGGC
ATTGCCGCAGATATAGCGCTGCTGCTGAATATTCTTATCGTGCTCTCTGTGCTTGCGGGGTTCAATGCCTCCCTCTCATT
GCCGGGTATTGCGGGAATTGTGCTCACGATGGGTATGGCTGTTGACGCCAACGTTCTGATTTATGAGCGAATCCGGGAGG
AGCTCGATGAGGGCAAGCCACTCAAATCGGCGATAACGCTCGGTTATGACCGGGCCTTTTCGTCGATTCTTGATTCGCAT
GTCACCACCCTTTCAGCGGCATTTCTTCTTTACACCTATGGTATTGGGCCTATTCAGGGTTTTGCGCTGACGCTGATGAT
CGGTACGGCGGCCAGTCTCTTTACCGCAATTGTTGTTACCAGGGAGATATTCACTATCCTGCTCGGCAGGAACATGATGA
CGGAAAAAAGTTTCGGTTAA

Upstream 100 bases:

>100_bases
GTCGGAGACAAGCTCCATTGAGAGAGGTCGATTGTTAATCAGTACCCTGTTTTATATATTGGCACAAATATTTCTATTCG
AGCGTTAAGCCAAGTCATCA

Downstream 100 bases:

>100_bases
TTTTTTCAATACGCATTGACCTATGAGGATTTTTCATAAAACAAGCTTTGATTTTATCAAGTATCGCAAAATCAGCTATG
CCATTTCAGTGTTTCTTCTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARRKSLKLGLDLKGGMHLVMEVD
QIDLFMQKAWNKDARFFELMDKVKQKSVTSDARVIDLIVNEFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKE
IIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDMLLRALDRVNSALVQASVQKPVVP
DSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLLQRADVQALLPQDSELLLSAK
PEVGEKGEKYYPIYLVKKTAELTGGVITEAKATFGSEGVQPEVMMSMNSDGTGKWARITGANIGKRIAIVLDGAVYSAPV
VQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAG
IAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREELDEGKPLKSAITLGYDRAFSSILDSH
VTTLSAAFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVTREIFTILLGRNMMTEKSFG

Sequences:

>Translated_619_residues
MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARRKSLKLGLDLKGGMHLVMEVD
QIDLFMQKAWNKDARFFELMDKVKQKSVTSDARVIDLIVNEFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKE
IIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDMLLRALDRVNSALVQASVQKPVVP
DSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLLQRADVQALLPQDSELLLSAK
PEVGEKGEKYYPIYLVKKTAELTGGVITEAKATFGSEGVQPEVMMSMNSDGTGKWARITGANIGKRIAIVLDGAVYSAPV
VQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAG
IAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREELDEGKPLKSAITLGYDRAFSSILDSH
VTTLSAAFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVTREIFTILLGRNMMTEKSFG
>Mature_619_residues
MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARRKSLKLGLDLKGGMHLVMEVD
QIDLFMQKAWNKDARFFELMDKVKQKSVTSDARVIDLIVNEFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKE
IIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDMLLRALDRVNSALVQASVQKPVVP
DSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLLQRADVQALLPQDSELLLSAK
PEVGEKGEKYYPIYLVKKTAELTGGVITEAKATFGSEGVQPEVMMSMNSDGTGKWARITGANIGKRIAIVLDGAVYSAPV
VQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAG
IAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREELDEGKPLKSAITLGYDRAFSSILDSH
VTTLSAAFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVTREIFTILLGRNMMTEKSFG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=571, Percent_Identity=33.0998248686515, Blast_Score=225, Evalue=7e-60,
Organism=Escherichia coli, GI1786610, Length=163, Percent_Identity=28.8343558282209, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67900; Mature: 67900

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARR
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
KSLKLGLDLKGGMHLVMEVDQIDLFMQKAWNKDARFFELMDKVKQKSVTSDARVIDLIVN
HHHEECEECCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
EFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKEIIRNRIDQYGVAEPVITTQG
HHHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
SRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDMLLRALDRVNSALVQASVQKPVVP
CCEEEEEEECCCCHHHHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
DSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLL
CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCHHHHHHHHH
QRADVQALLPQDSELLLSAKPEVGEKGEKYYPIYLVKKTAELTGGVITEAKATFGSEGVQ
HHCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEHHHHCCCHHHHHHHHCCCCCCC
PEVMMSMNSDGTGKWARITGANIGKRIAIVLDGAVYSAPVVQSKIPNGNSVINGIESLEE
CCEEEEECCCCCCCEEEEECCCCCCEEEEEECCCHHCCCHHHHCCCCCHHHHHHHHHHHH
AKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAG
HHCHHEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREELDEGKP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
LKSAITLGYDRAFSSILDSHVTTLSAAFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
REIFTILLGRNMMTEKSFG
HHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARR
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHH
KSLKLGLDLKGGMHLVMEVDQIDLFMQKAWNKDARFFELMDKVKQKSVTSDARVIDLIVN
HHHEECEECCCCEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
EFTKENIRLSRYFYDIRNSDKEIVGKLEKESEDALLRAKEIIRNRIDQYGVAEPVITTQG
HHHHCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
SRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPDMLLRALDRVNSALVQASVQKPVVP
CCEEEEEEECCCCHHHHHHHHHCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
DSLAVKDSAATASPAVAPPLDATASKQAKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLL
CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCHHHHHHHHH
QRADVQALLPQDSELLLSAKPEVGEKGEKYYPIYLVKKTAELTGGVITEAKATFGSEGVQ
HHCCHHHCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEHHHHCCCHHHHHHHHCCCCCCC
PEVMMSMNSDGTGKWARITGANIGKRIAIVLDGAVYSAPVVQSKIPNGNSVINGIESLEE
CCEEEEECCCCCCCEEEEECCCCCCEEEEEECCCHHCCCHHHHCCCCCHHHHHHHHHHHH
AKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAG
HHCHHEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREELDEGKP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
LKSAITLGYDRAFSSILDSHVTTLSAAFLLYTYGIGPIQGFALTLMIGTAASLFTAIVVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
REIFTILLGRNMMTEKSFG
HHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA