| Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
|---|---|
| Accession | NC_008639 |
| Length | 3,133,902 |
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The map label for this gene is pol [H]
Identifier: 119355877
GI number: 119355877
Start: 24550
End: 26940
Strand: Reverse
Name: pol [H]
Synonym: Cpha266_0027
Alternate gene names: 119355877
Gene position: 26940-24550 (Counterclockwise)
Preceding gene: 119355878
Following gene: 119355876
Centisome position: 0.86
GC content: 42.45
Gene sequence:
>2391_bases ATGGACACGCTTTCGCATGAAATCCTGAATAACGACCTGTTGTTCGGCAAAGACAAAGAAGAAAATATCGTAGGTGCTTA TCAACTCTCTGATACGCATATCAGACTGTTTTTCAGGAATGACGAAAAGATCTCTCATCGCGACGAACCGTTCTACCCCT ATTTTTTCCTCTCCGAAAGTTCGCTTCTTGAAGGATTCGTCCCGGAAGAGAACAGAAAGTACTGGATTATCAAACTAAAC GGGAACAACTTCTACAGGTTTCTGGCCATTTTCAGCAGTTGGAAAGATTTCAGGTCAGGGCTTGACATTATTAACGGCAA AAACAGAGCCGCCTCCCCGGAAGCTGATACAACAAATCCGGCGCCTTCATTCATCCCATTGACATATAGTAAAGGCGATG CCGTCACACAGTATTTTTTTCAGAGCGGCAAAACCCTGTTTAAAGGGCTTGACTTTTCCCGATTGCGCAGAATGCAGCTT GATATAGAAACATGCTACGATCCAGACAAAAAACGAACCGGTTCCGGAATAGGTGATGACGAAATCATTATCGTGTCGCT GAGTGATAATACCGGATGGGAACAAGTAATACATTCAAAAAACAGAGGCGAAAAAAAACTTCTTGAACATCTTGTTGAAA TAATCATAGCAAGAGATCCCGATGTTATTGAAGGGCACAATATTTTCAGCTTTGATCTGCCCTATATTCAAAAAAGATGC GACCGCCACAATATTAATTTTGCTATAGGACGAAACGGCACAACCGTACGATCTTATCCATCCAGCATCCGTTTTGCTGA AAGAATTATCGATTACCCCTATTTTGAAATCCCCGGACGGCACGTTATCGACACGCTTTTTCTCGTACAAGGGTATGATG TTTCAAAAAGAGCCATGCAGAGTTACGGTCTTAAAGCCGTAGCTAAATATTTTGGCTTTGCCTCTCCTGACCGTACCTAC GTCGAGTACAAGGATATTATTTCGACGTGGGAAAATAATCCCGATAAACTGCTTGCCTACGCTCTTGACGATGTCAGAGA GACAAGGGCACTTGCTTCGCATCTTTCGGGCAGCAACTATTATCTGTCTCGAATGATGCCATATACGTATGCGATGACCT CAAGACTTGGACAGGCAGCAAAAATAGAGGCTCTGTTTATCAGGGAATATCTTCGACAAAAACACTCAATTCCAAAACCG TCGTCAGGCCAGCAGCATTCAGGCGGATATACCGAAGTTTTTCTCAAAGGAATTCTTGGCCCGATAGTCTATGCGGATGT TGAATCGCTCTACCCCTCCATCATGCTTACCTGCGGGATCTGTCCGAAAACAGATGACCTTCGAGTATTCCCGAGCGTTC TTGGAAACCTGAAAGATCTTCGGTTCAAGACAAAAAAATTATCCGGAGAAGAGAAACAAAAGGGGAATCTTCAAATGGCC GATAACTTTGACGCTATGCAGGGCTCGTTTAAAATACTTATAAATGCAATGTATGGCTACCTTGGTTTCAACAATGGAAT CTTCAACGATTTCGATGAAGCAGACAAAGTCACAACCACGGGGCAGGGCATAGCAAAAAAAATGATCCATGAATTTGAAG CAAGAGGATGCAAGGTTATCGAGGTCGATACCGACGGGATTCTCTTTGTTCCTCCCCCCGGGATTGTGACTGAAAATGAA GAGAGAACCCTTGTCCGTGAAGTTTCTTCGCTGATGCCCGAAGGAATCAATATCGGCTACGACGGTCGATATAAAAAAAT GATTTCATACATGAAAAAGAATTATGCATTGCTCGATGATGATAATGTCATGATCGTTAAAGGTTCATCGCTAACGAGTA GAAGCAGTGAAAAATTCGGTCGCGATTTTGTGAAAAGGGGTTTTGAAAAACTTCTTTCTGAAGATATTGCCGGTCTTCAC GACCTCTATACCGAATACAAAGAAAAAATTCTGGCGCACGCTCTTGATATTGGTGATTTTTCAAGAACCGAAACGCTTAA AAGTACGATGGAACAGTATCTTGAAGATGTACGCTCAGGACGACGATCGAAATCGGTAACCTATGAGATCGCATTGAAAA ACGGCAAACAGGTAACAAAAGGAGAAAGGATAACCTACTACATATCAGGAACCGGAGGAATTAATCAAACCTTTGAGAAG GGAAAACTCGCTTCGGATTGGAAAAAAGATAATCCTGATGATAATACCGTTTTTTATCTGAAACGTCTCGATGAACATTG TCAGAAATTTCTTCCCTTTTTCAAACCACAGGATTACAGTTCTATTTTCTCATCCGATACGCTCTTCTCCTTTACTCCTG AAGGAATAGAGCTGATCAAGGAGATCATTCATACCGACACTGATACGACAGGGTCCGCTGGTCTGTATTGA
Upstream 100 bases:
>100_bases TGCAATCTTTTTGGGAGCAATAAACAGAGGCGCCCGACCGTTTTTGAAAAGTATCGGGAACAAACAACCGGATGAAACCA TAACCCGTGAACAATTAATC
Downstream 100 bases:
>100_bases AACTGCAGGAGTTGCATTGATTGAAGCTTAACATGCGGTATCGACGGAAGTTCTTCCTTCCGGGATGAAATCCGCATGCA TGGACCATTTTCAAGATCGT
Product: DNA polymerase B region
Products: NA
Alternate protein names: Pfu polymerase [H]
Number of amino acids: Translated: 796; Mature: 796
Protein sequence:
>796_residues MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKISHRDEPFYPYFFLSESSLLEGFVPEENRKYWIIKLN GNNFYRFLAIFSSWKDFRSGLDIINGKNRAASPEADTTNPAPSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQL DIETCYDPDKKRTGSGIGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIARDPDVIEGHNIFSFDLPYIQKRC DRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFEIPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTY VEYKDIISTWENNPDKLLAYALDDVRETRALASHLSGSNYYLSRMMPYTYAMTSRLGQAAKIEALFIREYLRQKHSIPKP SSGQQHSGGYTEVFLKGILGPIVYADVESLYPSIMLTCGICPKTDDLRVFPSVLGNLKDLRFKTKKLSGEEKQKGNLQMA DNFDAMQGSFKILINAMYGYLGFNNGIFNDFDEADKVTTTGQGIAKKMIHEFEARGCKVIEVDTDGILFVPPPGIVTENE ERTLVREVSSLMPEGINIGYDGRYKKMISYMKKNYALLDDDNVMIVKGSSLTSRSSEKFGRDFVKRGFEKLLSEDIAGLH DLYTEYKEKILAHALDIGDFSRTETLKSTMEQYLEDVRSGRRSKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEK GKLASDWKKDNPDDNTVFYLKRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIKEIIHTDTDTTGSAGLY
Sequences:
>Translated_796_residues MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKISHRDEPFYPYFFLSESSLLEGFVPEENRKYWIIKLN GNNFYRFLAIFSSWKDFRSGLDIINGKNRAASPEADTTNPAPSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQL DIETCYDPDKKRTGSGIGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIARDPDVIEGHNIFSFDLPYIQKRC DRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFEIPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTY VEYKDIISTWENNPDKLLAYALDDVRETRALASHLSGSNYYLSRMMPYTYAMTSRLGQAAKIEALFIREYLRQKHSIPKP SSGQQHSGGYTEVFLKGILGPIVYADVESLYPSIMLTCGICPKTDDLRVFPSVLGNLKDLRFKTKKLSGEEKQKGNLQMA DNFDAMQGSFKILINAMYGYLGFNNGIFNDFDEADKVTTTGQGIAKKMIHEFEARGCKVIEVDTDGILFVPPPGIVTENE ERTLVREVSSLMPEGINIGYDGRYKKMISYMKKNYALLDDDNVMIVKGSSLTSRSSEKFGRDFVKRGFEKLLSEDIAGLH DLYTEYKEKILAHALDIGDFSRTETLKSTMEQYLEDVRSGRRSKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEK GKLASDWKKDNPDDNTVFYLKRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIKEIIHTDTDTTGSAGLY >Mature_796_residues MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKISHRDEPFYPYFFLSESSLLEGFVPEENRKYWIIKLN GNNFYRFLAIFSSWKDFRSGLDIINGKNRAASPEADTTNPAPSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQL DIETCYDPDKKRTGSGIGDDEIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIARDPDVIEGHNIFSFDLPYIQKRC DRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFEIPGRHVIDTLFLVQGYDVSKRAMQSYGLKAVAKYFGFASPDRTY VEYKDIISTWENNPDKLLAYALDDVRETRALASHLSGSNYYLSRMMPYTYAMTSRLGQAAKIEALFIREYLRQKHSIPKP SSGQQHSGGYTEVFLKGILGPIVYADVESLYPSIMLTCGICPKTDDLRVFPSVLGNLKDLRFKTKKLSGEEKQKGNLQMA DNFDAMQGSFKILINAMYGYLGFNNGIFNDFDEADKVTTTGQGIAKKMIHEFEARGCKVIEVDTDGILFVPPPGIVTENE ERTLVREVSSLMPEGINIGYDGRYKKMISYMKKNYALLDDDNVMIVKGSSLTSRSSEKFGRDFVKRGFEKLLSEDIAGLH DLYTEYKEKILAHALDIGDFSRTETLKSTMEQYLEDVRSGRRSKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEK GKLASDWKKDNPDDNTVFYLKRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIKEIIHTDTDTTGSAGLY
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' exonuclease activity [H]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320101, Length=571, Percent_Identity=24.1681260945709, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR017964 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR004578 - InterPro: IPR023211 - InterPro: IPR012337 [H]
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 90834; Mature: 90834
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKISHRDEPFYPYFFLSES CCCHHHHHHCCCCEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCH SLLEGFVPEENRKYWIIKLNGNNFYRFLAIFSSWKDFRSGLDIINGKNRAASPEADTTNP HHHHCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC APSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQLDIETCYDPDKKRTGSGIGDD CCCEEEEEECCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCC EIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIARDPDVIEGHNIFSFDLPYIQKRC CEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEECCHHHHHHH DRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFEIPGRHVIDTLFLVQGYDVSKRAMQ CCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCHHHHHHH SYGLKAVAKYFGFASPDRTYVEYKDIISTWENNPDKLLAYALDDVRETRALASHLSGSNY HHCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE YLSRMMPYTYAMTSRLGQAAKIEALFIREYLRQKHSIPKPSSGQQHSGGYTEVFLKGILG EHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH PIVYADVESLYPSIMLTCGICPKTDDLRVFPSVLGNLKDLRFKTKKLSGEEKQKGNLQMA HHHHHHHHHHCHHHHEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHCCCEEEC DNFDAMQGSFKILINAMYGYLGFNNGIFNDFDEADKVTTTGQGIAKKMIHEFEARGCKVI CCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCEECCHHHHHHHHHHHHHHCCCEEE EVDTDGILFVPPPGIVTENEERTLVREVSSLMPEGINIGYDGRYKKMISYMKKNYALLDD EECCCCEEEECCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECC DNVMIVKGSSLTSRSSEKFGRDFVKRGFEKLLSEDIAGLHDLYTEYKEKILAHALDIGDF CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SRTETLKSTMEQYLEDVRSGRRSKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEK HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCEEEEEEECCCCCCHHHHC GKLASDWKKDNPDDNTVFYLKRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIK CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEECCHHHHHHH EIIHTDTDTTGSAGLY HHHHCCCCCCCCCCCC >Mature Secondary Structure MDTLSHEILNNDLLFGKDKEENIVGAYQLSDTHIRLFFRNDEKISHRDEPFYPYFFLSES CCCHHHHHHCCCCEECCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEECCH SLLEGFVPEENRKYWIIKLNGNNFYRFLAIFSSWKDFRSGLDIINGKNRAASPEADTTNP HHHHCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC APSFIPLTYSKGDAVTQYFFQSGKTLFKGLDFSRLRRMQLDIETCYDPDKKRTGSGIGDD CCCEEEEEECCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCC EIIIVSLSDNTGWEQVIHSKNRGEKKLLEHLVEIIIARDPDVIEGHNIFSFDLPYIQKRC CEEEEEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEECCHHHHHHH DRHNINFAIGRNGTTVRSYPSSIRFAERIIDYPYFEIPGRHVIDTLFLVQGYDVSKRAMQ CCCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCHHHHHHH SYGLKAVAKYFGFASPDRTYVEYKDIISTWENNPDKLLAYALDDVRETRALASHLSGSNY HHCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE YLSRMMPYTYAMTSRLGQAAKIEALFIREYLRQKHSIPKPSSGQQHSGGYTEVFLKGILG EHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH PIVYADVESLYPSIMLTCGICPKTDDLRVFPSVLGNLKDLRFKTKKLSGEEKQKGNLQMA HHHHHHHHHHCHHHHEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCCHHHCCCEEEC DNFDAMQGSFKILINAMYGYLGFNNGIFNDFDEADKVTTTGQGIAKKMIHEFEARGCKVI CCCHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCEECCHHHHHHHHHHHHHHCCCEEE EVDTDGILFVPPPGIVTENEERTLVREVSSLMPEGINIGYDGRYKKMISYMKKNYALLDD EECCCCEEEECCCCCEECCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECC DNVMIVKGSSLTSRSSEKFGRDFVKRGFEKLLSEDIAGLHDLYTEYKEKILAHALDIGDF CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC SRTETLKSTMEQYLEDVRSGRRSKSVTYEIALKNGKQVTKGERITYYISGTGGINQTFEK HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEECCCCEEEEEEECCCCCCHHHHC GKLASDWKKDNPDDNTVFYLKRLDEHCQKFLPFFKPQDYSSIFSSDTLFSFTPEGIELIK CCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEECCHHHHHHH EIIHTDTDTTGSAGLY HHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8441634; 1762925; 1579479 [H]