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The map label for this gene is intZ [H]

Identifier: 118581964

GI number: 118581964

Start: 3938275

End: 3939483

Strand: Direct

Name: intZ [H]

Synonym: Ppro_3565

Alternate gene names: 118581964

Gene position: 3938275-3939483 (Clockwise)

Preceding gene: 118581963

Following gene: 118581972

Centisome position: 98.26

GC content: 50.29

Gene sequence:

>1209_bases
ATGAAGCCATACAGATCAAACACCAGCAGAAAATTTCCGTTCACTAAAAAGGCCATAGAAGCACTGCCAGCACATGATCC
AGCAAGTCCATCCAGGGAAATGGAGTATGCCGACATAGAATGCATTGGCCTTCACCTGAGGGTATCCAAGAATGGTCGCC
GCTTTTTTCAGCACAGATACCGATACCTCGGAAGAAAGATGTGCCTGTCACTGGGAGAATTCCCTGCGGTTAGCGTACAG
GATGCCCGATCGCGGGTGGCAGAACACAAGGCGCTTCTGGCAAGGGACAAAGATCCTGCAGCAGAGAGAGGAAAAGTACG
TGCCGATCTGACGTTCGAAGAGTTTTCGACCCAGCACTACCTACCACACGCCAAGGCTCACAAACAGACCTGGGACGACG
ACAAGAACCAGATCGAGCGCCGACTGAATCCGATTCTGGGTAAACTTCGACTGCAGGCAATCACCCCCAGAGATGTGGCG
ATGGTTCACTCCAAAGAGAAGGAAAGAACCACTGCTTGCACAGCAAACCATCTACTGGCCACTCTGAAGAGAATGCTGAA
TCTTGCCGTCAAGTGGGGACTGCTGGAGAAAAATCCTGCTGGTGGTCAGGAAAAGTTCAAGGAAGGTCCACTGAGAGAGC
GCTACCTGAGCAAGGAAGAATTGCCGAAATTCCTGAAGGCACTGGAAGATCAAGATGACCTTCTCTCGGTGGCTGCATTG
CGAATGCTGCTGTACACAGGTTGCCGACGTGAAGAGATCATGTCTCTACGCTGGGAAAATGTACGCCTTGATGAGGAGCG
TATTTTCTTACCCAAAACAAAGAATGGCCGAAGCAGGACGGTACACCTGAATGCCAGGGCAAAAGAAGTGATACAGGACC
TTCAGGCACGGAAAGATCAGGAGGACCGTACTCGTGGCAGTGAATATGTATTCCCTTCACGACAAGGCACCAAGAAGGGA
TACATCTATGACCTGAGAAAACCTTTTGAGAAGGCATGCCTGAATGCCGGAATAGACAACTTCCGCATACATGATCTCAG
ACACACATTCGCCAGTATGGCAGTCAGTTCAGGTGCTGACCTCTACGCCGTACAGCGGCTATTGGGACACCAAGATATAG
CCATGACCCAGAGGTACGCACATTTGAATGCTGATGATCTGAAGAAAGCTACAGAGGGTGTATCAGAAATGTTTGATCGT
GCTGCCTGA

Upstream 100 bases:

>100_bases
ATTTTGCACAAGATGTTACAAGGCAATGATCCCCGGCCTTAGTGCATCTGCTTACAAAGGGGATGCGCCAAAAAAAAATA
ATATCGAGAAAGGAAAACAA

Downstream 100 bases:

>100_bases
CATTTGAGTTCCCCCTATCCGTTGTCACTGGGTAGGGGGCTTTTTGCGTGCTAAGACTGTTGAGCGTCACACTTTCAATT
TTTTCGAAGGGTTACAGGGA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MKPYRSNTSRKFPFTKKAIEALPAHDPASPSREMEYADIECIGLHLRVSKNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQ
DARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVA
MVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAAL
RMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKG
YIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDR
AA

Sequences:

>Translated_402_residues
MKPYRSNTSRKFPFTKKAIEALPAHDPASPSREMEYADIECIGLHLRVSKNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQ
DARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVA
MVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAAL
RMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKG
YIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDR
AA
>Mature_402_residues
MKPYRSNTSRKFPFTKKAIEALPAHDPASPSREMEYADIECIGLHLRVSKNGRRFFQHRYRYLGRKMCLSLGEFPAVSVQ
DARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVA
MVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAAL
RMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKG
YIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDR
AA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=359, Percent_Identity=27.0194986072423, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1786748, Length=348, Percent_Identity=26.1494252873563, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788690, Length=337, Percent_Identity=23.7388724035608, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI2367104, Length=393, Percent_Identity=22.1374045801527, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788974, Length=307, Percent_Identity=25.7328990228013, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46359; Mature: 46359

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYRSNTSRKFPFTKKAIEALPAHDPASPSREMEYADIECIGLHLRVSKNGRRFFQHRY
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHH
RYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEHHHHCCHHC
LPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVAMVHSKEKERTTACTANHLLA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHHHHHH
TLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAAL
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
RMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQ
HHHHHHCCCHHHHHHHHHCCCEECCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCH
EDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGAD
HHHHCCCCEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
LYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRAA
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPYRSNTSRKFPFTKKAIEALPAHDPASPSREMEYADIECIGLHLRVSKNGRRFFQHRY
CCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHH
RYLGRKMCLSLGEFPAVSVQDARSRVAEHKALLARDKDPAAERGKVRADLTFEEFSTQHY
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEHHHHCCHHC
LPHAKAHKQTWDDDKNQIERRLNPILGKLRLQAITPRDVAMVHSKEKERTTACTANHLLA
CCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEECCHHHHHHHCCHHHHHHHHHHHHHHH
TLKRMLNLAVKWGLLEKNPAGGQEKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAAL
HHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
RMLLYTGCRREEIMSLRWENVRLDEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQ
HHHHHHCCCHHHHHHHHHCCCEECCCEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCCH
EDRTRGSEYVFPSRQGTKKGYIYDLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGAD
HHHHCCCCEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
LYAVQRLLGHQDIAMTQRYAHLNADDLKKATEGVSEMFDRAA
HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]