Click here to switch to the map view.

The map label for this gene is yjdF [H]

Identifier: 118581767

GI number: 118581767

Start: 3718050

End: 3718715

Strand: Direct

Name: yjdF [H]

Synonym: Ppro_3367

Alternate gene names: 118581767

Gene position: 3718050-3718715 (Clockwise)

Preceding gene: 118581766

Following gene: 118581768

Centisome position: 92.77

GC content: 64.71

Gene sequence:

>666_bases
ATGACAAGGAACCTACACGCAGCCGGGCAGGGGTTCCCCCTGCCGCCTTCCGTCCGCGAACCGCTCTGCCTGCTTGCCGT
CGCGCTGGTCGCACTGACGTTTTCGGCATTTAACCCCCATGACCGCATGACCTGGCTGCTGGAGGTGTTTCCCTTCTTCA
TCGCAGCGGGAATCATGGTGCCCACCTGGAGAAGCTTCCCCCTCACCCCGCTGCTCTACCGCTTGATCCTGCTGCACTGC
CTGGTTCTGCTCATCGGTGGCCACTACACCTATGCCCAGGTCCCCTTCGGCTACTGGCTGCAGGACTTGTTCGCCCTCAG
CCGCAACCCCTATGACCGCATCGGTCATTTCGCCCAGGGCTTCGTGCCGGCCATAGTGGCTCGGGAGATCCTGCTGCGCC
GGACGCCGCTGCTGCGCGGAGGGTGGCTCTTCTTCCTGGTGGCCGCAGTCTGCCTGGCAATGAGCGCCTGTTACGAGTTC
ATCGAATGGTGGGGCGCTCTGATCCTGGGCCAGGAAGCAGATGCCTTTCTCGCCACCCAGGGGGACCAGTGGGACACCCA
GTGGGATATGCTGACCGCGCTGCTGGGCGCCCTGGCCAGCCAGCTCTCCCTGGCACGCATCCACGACCGGCAGTTGGAGC
GGCTGGCAAGGGAAGCGCGGGAGTGA

Upstream 100 bases:

>100_bases
CAGCGGCGTGCCGCTGATCATGGTCGGCAACCGGCGCATGTCCGGTTTTTCGCCAGAGTTGCTGGAGCAGTATCTGGGAA
ACCGCTGAGGCTCGTACCCG

Downstream 100 bases:

>100_bases
CGGGGACGGGACAGCGCAGATCCGGGCCGGCCTGTTGTCCCGTGGCCGACTTCCGGCTCACAACCGGTATGATTTCACCC
GTGCGATATTACGCCTGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTRNLHAAGQGFPLPPSVREPLCLLAVALVALTFSAFNPHDRMTWLLEVFPFFIAAGIMVPTWRSFPLTPLLYRLILLHC
LVLLIGGHYTYAQVPFGYWLQDLFALSRNPYDRIGHFAQGFVPAIVAREILLRRTPLLRGGWLFFLVAAVCLAMSACYEF
IEWWGALILGQEADAFLATQGDQWDTQWDMLTALLGALASQLSLARIHDRQLERLAREARE

Sequences:

>Translated_221_residues
MTRNLHAAGQGFPLPPSVREPLCLLAVALVALTFSAFNPHDRMTWLLEVFPFFIAAGIMVPTWRSFPLTPLLYRLILLHC
LVLLIGGHYTYAQVPFGYWLQDLFALSRNPYDRIGHFAQGFVPAIVAREILLRRTPLLRGGWLFFLVAAVCLAMSACYEF
IEWWGALILGQEADAFLATQGDQWDTQWDMLTALLGALASQLSLARIHDRQLERLAREARE
>Mature_220_residues
TRNLHAAGQGFPLPPSVREPLCLLAVALVALTFSAFNPHDRMTWLLEVFPFFIAAGIMVPTWRSFPLTPLLYRLILLHCL
VLLIGGHYTYAQVPFGYWLQDLFALSRNPYDRIGHFAQGFVPAIVAREILLRRTPLLRGGWLFFLVAAVCLAMSACYEFI
EWWGALILGQEADAFLATQGDQWDTQWDMLTALLGALASQLSLARIHDRQLERLAREARE

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=198, Percent_Identity=54.5454545454545, Blast_Score=214, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 25028; Mature: 24896

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRNLHAAGQGFPLPPSVREPLCLLAVALVALTFSAFNPHDRMTWLLEVFPFFIAAGIMV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
PTWRSFPLTPLLYRLILLHCLVLLIGGHYTYAQVPFGYWLQDLFALSRNPYDRIGHFAQG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
FVPAIVAREILLRRTPLLRGGWLFFLVAAVCLAMSACYEFIEWWGALILGQEADAFLATQ
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
GDQWDTQWDMLTALLGALASQLSLARIHDRQLERLAREARE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRNLHAAGQGFPLPPSVREPLCLLAVALVALTFSAFNPHDRMTWLLEVFPFFIAAGIMV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
PTWRSFPLTPLLYRLILLHCLVLLIGGHYTYAQVPFGYWLQDLFALSRNPYDRIGHFAQG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
FVPAIVAREILLRRTPLLRGGWLFFLVAAVCLAMSACYEFIEWWGALILGQEADAFLATQ
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
GDQWDTQWDMLTALLGALASQLSLARIHDRQLERLAREARE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]