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The map label for this gene is ydiF [H]

Identifier: 118581709

GI number: 118581709

Start: 3646459

End: 3648087

Strand: Reverse

Name: ydiF [H]

Synonym: Ppro_3309

Alternate gene names: 118581709

Gene position: 3648087-3646459 (Counterclockwise)

Preceding gene: 118581710

Following gene: 118581708

Centisome position: 91.02

GC content: 62.74

Gene sequence:

>1629_bases
ATGATCCATCTGACCAATATCAGCAAGCAGTACGGCTCCCAGGTTCTCTTCCGCGAGGCGGGTTTCCAGATCCTGCCCGC
AAGCCGCAGCGGCCTGGTGGGCCCCAACGGCGCGGGTAAGAGCTCCCTGTTCCGTATCATCACCGGCGAAGAGGAGCTGG
ATGCTGGCGAGATCACCCGCGCCAAAAAGAGCACCATCGGCTACTTCTCCCAGGATGTGGGTGACATGTTCGGACGTACG
GCCCTGGAAGAGGTGATGGCCGGCTCGGCCGACACCATGCGACTGGCCGACGAACTCAAGCAGATGGAGGCGGCCATGTG
CCTGCCCCAGTCGGACGAGGAGATGGCCCTTCTGCTGGAGCGCTACGGTATTGCCCAGGAGGAGTTCGAGCACCGTGACG
GCTACAACCTGGACACCCGTGCCCAGACCGTGCTGACCGGCCTGGGCATCGGGCCGGATCGCTTCAACCAGCCGGTGGAA
TCATTCAGCGGCGGCTGGAAGATGCGCATCGCCCTGGCCAGGATCCTGACCCAGAAGCCGGACGTGCTGCTCTTGGATGA
ACCAACCAATCACCTGGACGTGGAATCGATCATCTGGCTGGAGGAGTGGCTTGCCGACGAATTCGACGGTGCCCTCTTGA
TGACCAGCCATGACCGCGATTTCATGAACCGGGTGGTGACCCGCATCATCGAGGTGGCCAACAGGACCATCACCACCTAC
GGCGGCAACTACGACTTTTACGAACGGGAACGGGACATCCGGCGGGAGCAGCTCCTGGCCAGCCACAAGCGCCAGCAGGA
GATGCTGGCCAAGGAGGAGGAGTTCATTGCTCGATTCGCGGCCCGCGCCTCCCATGCCGCCCAGGTCCAGTCGCGGGTCA
AGAAGATCGAGAAGATCGAGCGCATCGAAATCCCCCCCGAGGAACGCGCGGTGCGCTTCGAGTTTAGCGAACCGCCCCGC
AGCGGCGACGACGTTCTGCTGATGGACAGCCTGGCCAAGGTTTGGAAGCGTGAGGACGGTACGGACCACCCGGTTTTCAG
CGGCATCTCCGGTATCATTCGCCGGGGCAACAGGGTTGCCCTGGTAGGCGTCAACGGGGCCGGCAAATCGACCCTCCTGA
AACTGCTGGCCGGCCACGCAGAGCCGACCAGCGGCAGCTTTAGCCTGGGCGCCAACGTGGAGCTGGGCTACTTCAGCCAG
CATGCCATGGAGCTTCTTGATCCGGGCAAGACGGTCTTCGAGACCCTCCAGGACGCCATGCCCCTGGCGAATATCGGCGT
GATCCGCAACCTGCTGGGCGCCTTCCTTTTTTCCGGTGACGCCATCGACAAGCGCATCGGGAACCTCTCTGGCGGCGAGA
AGAGCAGGGTGGTGCTGGCAACGCTCCTGGCGCGGCCGATCAATTTCCTGGTGCTGGACGAACCGACCAACCACCTGGAT
ATCCGCTCGCGGGAGATCCTTCTGGGCGCCCTGCGGAATTTCAGCGGCACGGTGCTGCTGGTGAGCCACGACCGCCATTT
CCTGCGCCAGTTGGTGGACCGGGTCTTTGAAATCGACCATGGCGAGATGCGCACCTACGAGGGTAACTACGACTACTACC
TGGCAAAGGTTCATGAGGCCCAGGGGTAG

Upstream 100 bases:

>100_bases
ACGGCGAGAAGATCTCCAACCCCAACCTGGAGCTGGATGCGGCCGGCGAGTACATCGTCCAGATCGGGCGCCGCCGTTTC
GGCCGGATCATCGTCAGCGC

Downstream 100 bases:

>100_bases
AAAAAAATCTTTTTTTCAATAGGCATTTAATTACATTGACAGCCCTGCGCCAGGCTGTTACTGTAACGAAGCTCTCGTGG
ATGCCACGGAGTAATTAAAA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MIHLTNISKQYGSQVLFREAGFQILPASRSGLVGPNGAGKSSLFRIITGEEELDAGEITRAKKSTIGYFSQDVGDMFGRT
ALEEVMAGSADTMRLADELKQMEAAMCLPQSDEEMALLLERYGIAQEEFEHRDGYNLDTRAQTVLTGLGIGPDRFNQPVE
SFSGGWKMRIALARILTQKPDVLLLDEPTNHLDVESIIWLEEWLADEFDGALLMTSHDRDFMNRVVTRIIEVANRTITTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERAVRFEFSEPPR
SGDDVLLMDSLAKVWKREDGTDHPVFSGISGIIRRGNRVALVGVNGAGKSTLLKLLAGHAEPTSGSFSLGANVELGYFSQ
HAMELLDPGKTVFETLQDAMPLANIGVIRNLLGAFLFSGDAIDKRIGNLSGGEKSRVVLATLLARPINFLVLDEPTNHLD
IRSREILLGALRNFSGTVLLVSHDRHFLRQLVDRVFEIDHGEMRTYEGNYDYYLAKVHEAQG

Sequences:

>Translated_542_residues
MIHLTNISKQYGSQVLFREAGFQILPASRSGLVGPNGAGKSSLFRIITGEEELDAGEITRAKKSTIGYFSQDVGDMFGRT
ALEEVMAGSADTMRLADELKQMEAAMCLPQSDEEMALLLERYGIAQEEFEHRDGYNLDTRAQTVLTGLGIGPDRFNQPVE
SFSGGWKMRIALARILTQKPDVLLLDEPTNHLDVESIIWLEEWLADEFDGALLMTSHDRDFMNRVVTRIIEVANRTITTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERAVRFEFSEPPR
SGDDVLLMDSLAKVWKREDGTDHPVFSGISGIIRRGNRVALVGVNGAGKSTLLKLLAGHAEPTSGSFSLGANVELGYFSQ
HAMELLDPGKTVFETLQDAMPLANIGVIRNLLGAFLFSGDAIDKRIGNLSGGEKSRVVLATLLARPINFLVLDEPTNHLD
IRSREILLGALRNFSGTVLLVSHDRHFLRQLVDRVFEIDHGEMRTYEGNYDYYLAKVHEAQG
>Mature_542_residues
MIHLTNISKQYGSQVLFREAGFQILPASRSGLVGPNGAGKSSLFRIITGEEELDAGEITRAKKSTIGYFSQDVGDMFGRT
ALEEVMAGSADTMRLADELKQMEAAMCLPQSDEEMALLLERYGIAQEEFEHRDGYNLDTRAQTVLTGLGIGPDRFNQPVE
SFSGGWKMRIALARILTQKPDVLLLDEPTNHLDVESIIWLEEWLADEFDGALLMTSHDRDFMNRVVTRIIEVANRTITTY
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIERIEIPPEERAVRFEFSEPPR
SGDDVLLMDSLAKVWKREDGTDHPVFSGISGIIRRGNRVALVGVNGAGKSTLLKLLAGHAEPTSGSFSLGANVELGYFSQ
HAMELLDPGKTVFETLQDAMPLANIGVIRNLLGAFLFSGDAIDKRIGNLSGGEKSRVVLATLLARPINFLVLDEPTNHLD
IRSREILLGALRNFSGTVLLVSHDRHFLRQLVDRVFEIDHGEMRTYEGNYDYYLAKVHEAQG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=548, Percent_Identity=34.8540145985401, Blast_Score=279, Evalue=5e-75,
Organism=Homo sapiens, GI27881506, Length=545, Percent_Identity=33.0275229357798, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI10947137, Length=545, Percent_Identity=32.6605504587156, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI69354671, Length=556, Percent_Identity=30.9352517985612, Blast_Score=216, Evalue=6e-56,
Organism=Homo sapiens, GI10947135, Length=556, Percent_Identity=30.9352517985612, Blast_Score=215, Evalue=7e-56,
Organism=Escherichia coli, GI1789751, Length=545, Percent_Identity=35.4128440366973, Blast_Score=338, Evalue=4e-94,
Organism=Escherichia coli, GI1787041, Length=539, Percent_Identity=35.4359925788497, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI2367384, Length=526, Percent_Identity=32.319391634981, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1787182, Length=536, Percent_Identity=35.4477611940299, Blast_Score=258, Evalue=7e-70,
Organism=Escherichia coli, GI1789891, Length=204, Percent_Identity=27.9411764705882, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788165, Length=191, Percent_Identity=32.4607329842932, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787758, Length=190, Percent_Identity=28.4210526315789, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081791, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=31.4159292035398, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=32.5, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790739, Length=206, Percent_Identity=29.126213592233, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787164, Length=189, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787712, Length=211, Percent_Identity=25.1184834123223, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786398, Length=201, Percent_Identity=29.3532338308458, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=199, Percent_Identity=30.6532663316583, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=28.2926829268293, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=542, Percent_Identity=33.3948339483395, Blast_Score=261, Evalue=7e-70,
Organism=Caenorhabditis elegans, GI17555318, Length=508, Percent_Identity=33.0708661417323, Blast_Score=234, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17559834, Length=557, Percent_Identity=30.5206463195691, Blast_Score=232, Evalue=3e-61,
Organism=Caenorhabditis elegans, GI17567243, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71983516, Length=266, Percent_Identity=24.812030075188, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=266, Percent_Identity=24.812030075188, Blast_Score=66, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=266, Percent_Identity=24.812030075188, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=208, Percent_Identity=29.8076923076923, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=543, Percent_Identity=31.8600368324125, Blast_Score=265, Evalue=2e-71,
Organism=Saccharomyces cerevisiae, GI6321121, Length=565, Percent_Identity=30.9734513274336, Blast_Score=262, Evalue=9e-71,
Organism=Saccharomyces cerevisiae, GI6325030, Length=401, Percent_Identity=31.1720698254364, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6324314, Length=396, Percent_Identity=25.7575757575758, Blast_Score=126, Evalue=7e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=396, Percent_Identity=25, Blast_Score=124, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24666836, Length=538, Percent_Identity=34.7583643122677, Blast_Score=293, Evalue=3e-79,
Organism=Drosophila melanogaster, GI24642252, Length=537, Percent_Identity=30.9124767225326, Blast_Score=243, Evalue=3e-64,
Organism=Drosophila melanogaster, GI18859989, Length=537, Percent_Identity=30.9124767225326, Blast_Score=243, Evalue=3e-64,
Organism=Drosophila melanogaster, GI24641342, Length=559, Percent_Identity=31.1270125223614, Blast_Score=240, Evalue=2e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 60670; Mature: 60670

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHLTNISKQYGSQVLFREAGFQILPASRSGLVGPNGAGKSSLFRIITGEEELDAGEITR
CEEECCCHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AKKSTIGYFSQDVGDMFGRTALEEVMAGSADTMRLADELKQMEAAMCLPQSDEEMALLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGIAQEEFEHRDGYNLDTRAQTVLTGLGIGPDRFNQPVESFSGGWKMRIALARILTQKP
HHCCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCC
DVLLLDEPTNHLDVESIIWLEEWLADEFDGALLMTSHDRDFMNRVVTRIIEVANRTITTY
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPPEERAVRFEFSEPPRSGDDVLLMDSLAKVWKREDGTDHPVFSGISGIIRRGNRVA
HCCCCCHHCEEEEEECCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEE
LVGVNGAGKSTLLKLLAGHAEPTSGSFSLGANVELGYFSQHAMELLDPGKTVFETLQDAM
EEEECCCCHHHHHHHHHCCCCCCCCCEECCCCEEECHHHHHHHHHHCCCHHHHHHHHHHC
PLANIGVIRNLLGAFLFSGDAIDKRIGNLSGGEKSRVVLATLLARPINFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLGALRNFSGTVLLVSHDRHFLRQLVDRVFEIDHGEMRTYEGNYDYYLAKVHEA
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECC
QG
CC
>Mature Secondary Structure
MIHLTNISKQYGSQVLFREAGFQILPASRSGLVGPNGAGKSSLFRIITGEEELDAGEITR
CEEECCCHHHHCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHH
AKKSTIGYFSQDVGDMFGRTALEEVMAGSADTMRLADELKQMEAAMCLPQSDEEMALLLE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
RYGIAQEEFEHRDGYNLDTRAQTVLTGLGIGPDRFNQPVESFSGGWKMRIALARILTQKP
HHCCCHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHCCCHHHHCCCCCHHHHHHHHHCCCC
DVLLLDEPTNHLDVESIIWLEEWLADEFDGALLMTSHDRDFMNRVVTRIIEVANRTITTY
CEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE
GGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKIEKIE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIEIPPEERAVRFEFSEPPRSGDDVLLMDSLAKVWKREDGTDHPVFSGISGIIRRGNRVA
HCCCCCHHCEEEEEECCCCCCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEE
LVGVNGAGKSTLLKLLAGHAEPTSGSFSLGANVELGYFSQHAMELLDPGKTVFETLQDAM
EEEECCCCHHHHHHHHHCCCCCCCCCEECCCCEEECHHHHHHHHHHCCCHHHHHHHHHHC
PLANIGVIRNLLGAFLFSGDAIDKRIGNLSGGEKSRVVLATLLARPINFLVLDEPTNHLD
CHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCC
IRSREILLGALRNFSGTVLLVSHDRHFLRQLVDRVFEIDHGEMRTYEGNYDYYLAKVHEA
CCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEECC
QG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]