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The map label for this gene is ydaM [C]

Identifier: 118581661

GI number: 118581661

Start: 3582629

End: 3583474

Strand: Reverse

Name: ydaM [C]

Synonym: Ppro_3261

Alternate gene names: 118581661

Gene position: 3583474-3582629 (Counterclockwise)

Preceding gene: 118581662

Following gene: 118581659

Centisome position: 89.41

GC content: 64.3

Gene sequence:

>846_bases
GTGGAGGAGGACCTGATCGTGATAACGCGTCGTTTCCTGTTTGGCATCTCCCTGGTTCTGGTCGGGGCGGCTGGCTGCGG
CGATTTTCTTGCCGACGGGCACGTATCCATGCTGCTGCTCTATGCCGCCGCCGTGCTGCTGTCCGGCTGGTACTGCGGCA
GGGTGGGGGGGATAATCGTTGCGATGGCCGCGACCGCCAGTTGGTTGGTGGCCAACAGGCTCCAGCAGCCTCCGGGGGAG
GGGAACCTCATATTCTCCTGGAACGCCTTCAGCCGCCTGGCCATCTTCCTGCTGATCGCCTCAGCCGCATCGTCGCAGTC
ACGGCTGAAAAGTGCCTTGGAACGGGAGTCCCACAAAAGCGGCACCGATCGCCTGACCGGCCTGCTCAACGGGACAGCCT
TCCGGGAGCGGGTGGAAGAGGAGATGGAGCGCTCCCGACGCTACGGCCACCACTTTTCACTGGCCCTGATCGACCTGGAC
GAATTCCAGCAGATCAACGAGACCCGGGGCACCTCCCGCGGGGACAGGCTGCTGCAGGACACCGGCGAAGCCATCGTCCA
GTGCATACGGAAGACCGACATCGCCGGCCGCATCGGTGGCGACGAGTTCACGGTGCTCTTTCCGGAAACGAGCGGACAGC
AGGCACGCTGCGCAATCGAGAAACTGCTCATGGCGCTGGACATGATGACCAGCCGCTCCGGCTGGCAGGTTACCGCCAGC
ATCGGCGTGGTCAGCTGCGAGAAGGGGGTCGAGACCTACGACGCGCTTCTGGACCGGGCCGCCACCATGCTGGACGCAGC
CCGGGAAAAGGGAAGGAACGGGGCGGAGTTCATGGTGATCGACTGA

Upstream 100 bases:

>100_bases
ATGATCCCCTATTTCAACCTGGGCGGCTAGATTCTTCGTTCCGCCCCGGTTCCGCAGCCGGCGATTCCCGCGTCCCCGCA
CAGGGGGGGCGCGGGACAGC

Downstream 100 bases:

>100_bases
ACGCAGCCGGGCACTCCGGGCGGAGACGCCTTCCCGACTCAGAGGATCAGGCGCACCCCACCCAGAGCCTCGATCTCGTG
GGGGAAACGGTCGCCGGGGT

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MEEDLIVITRRFLFGISLVLVGAAGCGDFLADGHVSMLLLYAAAVLLSGWYCGRVGGIIVAMAATASWLVANRLQQPPGE
GNLIFSWNAFSRLAIFLLIASAASSQSRLKSALERESHKSGTDRLTGLLNGTAFRERVEEEMERSRRYGHHFSLALIDLD
EFQQINETRGTSRGDRLLQDTGEAIVQCIRKTDIAGRIGGDEFTVLFPETSGQQARCAIEKLLMALDMMTSRSGWQVTAS
IGVVSCEKGVETYDALLDRAATMLDAAREKGRNGAEFMVID

Sequences:

>Translated_281_residues
MEEDLIVITRRFLFGISLVLVGAAGCGDFLADGHVSMLLLYAAAVLLSGWYCGRVGGIIVAMAATASWLVANRLQQPPGE
GNLIFSWNAFSRLAIFLLIASAASSQSRLKSALERESHKSGTDRLTGLLNGTAFRERVEEEMERSRRYGHHFSLALIDLD
EFQQINETRGTSRGDRLLQDTGEAIVQCIRKTDIAGRIGGDEFTVLFPETSGQQARCAIEKLLMALDMMTSRSGWQVTAS
IGVVSCEKGVETYDALLDRAATMLDAAREKGRNGAEFMVID
>Mature_281_residues
MEEDLIVITRRFLFGISLVLVGAAGCGDFLADGHVSMLLLYAAAVLLSGWYCGRVGGIIVAMAATASWLVANRLQQPPGE
GNLIFSWNAFSRLAIFLLIASAASSQSRLKSALERESHKSGTDRLTGLLNGTAFRERVEEEMERSRRYGHHFSLALIDLD
EFQQINETRGTSRGDRLLQDTGEAIVQCIRKTDIAGRIGGDEFTVLFPETSGQQARCAIEKLLMALDMMTSRSGWQVTAS
IGVVSCEKGVETYDALLDRAATMLDAAREKGRNGAEFMVID

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=33.5195530726257, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=28.3505154639175, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=30.8080808080808, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=28.8343558282209, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788381, Length=118, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=29.6703296703297, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787262, Length=170, Percent_Identity=25.2941176470588, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=27.6729559748428, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87081977, Length=88, Percent_Identity=38.6363636363636, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 30688; Mature: 30688

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEDLIVITRRFLFGISLVLVGAAGCGDFLADGHVSMLLLYAAAVLLSGWYCGRVGGIIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
AMAATASWLVANRLQQPPGEGNLIFSWNAFSRLAIFLLIASAASSQSRLKSALERESHKS
HHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
GTDRLTGLLNGTAFRERVEEEMERSRRYGHHFSLALIDLDEFQQINETRGTSRGDRLLQD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHCCCCCHHHHHHH
TGEAIVQCIRKTDIAGRIGGDEFTVLFPETSGQQARCAIEKLLMALDMMTSRSGWQVTAS
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
IGVVSCEKGVETYDALLDRAATMLDAAREKGRNGAEFMVID
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure
MEEDLIVITRRFLFGISLVLVGAAGCGDFLADGHVSMLLLYAAAVLLSGWYCGRVGGIIV
CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
AMAATASWLVANRLQQPPGEGNLIFSWNAFSRLAIFLLIASAASSQSRLKSALERESHKS
HHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
GTDRLTGLLNGTAFRERVEEEMERSRRYGHHFSLALIDLDEFQQINETRGTSRGDRLLQD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHCCCCCHHHHHHH
TGEAIVQCIRKTDIAGRIGGDEFTVLFPETSGQQARCAIEKLLMALDMMTSRSGWQVTAS
HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
IGVVSCEKGVETYDALLDRAATMLDAAREKGRNGAEFMVID
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]