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The map label for this gene is dapB [H]

Identifier: 118581662

GI number: 118581662

Start: 3583545

End: 3584300

Strand: Reverse

Name: dapB [H]

Synonym: Ppro_3262

Alternate gene names: 118581662

Gene position: 3584300-3583545 (Counterclockwise)

Preceding gene: 118581663

Following gene: 118581661

Centisome position: 89.43

GC content: 58.86

Gene sequence:

>756_bases
ATGAAAGTTGGTCTGATGGGATTTGGCAAGACGGGCAAGGCTGTGGCATCGGTCCTGCTGCAGAGTGACGAGGTGAAGCT
CCAGTGGGTCGTGCGGAGGTCGCACAACCTGGAGCACAGGTCGGTCCCAGAATTTTTGGGCATCAACGCCAGGGATCCGG
GGATGATCTACTCCTTCGAGGAGTATACGGCGCAGCAGCTCCTGGACCGGCTTCCGGTGGATGTGATCATCGACTTCTCC
TCGGAACAGGGGGTCGACTACTACGGTGAAGAGGCGCGCGGACGGAAGATAGCCGTGGTCAGCGCCATCTCTGAGTACTC
ACCCGAGAAACGGGAGTATCTGAAGTATCTGGCCGAGGAGACCAGGGTGGTCTGGTCACCCAACATCACCATCGGGATCA
ACTTCCTGATGATCGCGGCCAAGGTCCTGAAGAACATCGCTCCCTACACGGACATTGAGATCGTCGAGGAGCATTTCAAG
GGGAAACCGGAGGTCTCGGGGACTGCCAGAAAGATCGCCTTGGCCCTTGGTCTGCCGGAGGGGGCGATCAAGACCATCCG
GGCCGGCGGGATCATCGGCATCCATGAGATACTGTTTGGATTCCCTTACCAGACCGTGCGCCTCAAGCATGAATCCATCA
CCCGTGAGGCTTTCGGCAACGGCGTGCTCTTCGCGGCACGGCACGTCATCGAGCAGGAGGCTGGCCTGTACGGCATGGAA
GACCTGATGATCCCCTATTTCAACCTGGGCGGCTAG

Upstream 100 bases:

>100_bases
GATCTGATCCTGCGGGGGATGGAGATGCTGCTGCGGGAGTGCCGCACTCCATGTAAAGCTTGATTTTGAAGGAAAAGTTC
GAAAGGAGAATGAGCGATAT

Downstream 100 bases:

>100_bases
ATTCTTCGTTCCGCCCCGGTTCCGCAGCCGGCGATTCCCGCGTCCCCGCACAGGGGGGGCGCGGGACAGCGTGGAGGAGG
ACCTGATCGTGATAACGCGT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKVGLMGFGKTGKAVASVLLQSDEVKLQWVVRRSHNLEHRSVPEFLGINARDPGMIYSFEEYTAQQLLDRLPVDVIIDFS
SEQGVDYYGEEARGRKIAVVSAISEYSPEKREYLKYLAEETRVVWSPNITIGINFLMIAAKVLKNIAPYTDIEIVEEHFK
GKPEVSGTARKIALALGLPEGAIKTIRAGGIIGIHEILFGFPYQTVRLKHESITREAFGNGVLFAARHVIEQEAGLYGME
DLMIPYFNLGG

Sequences:

>Translated_251_residues
MKVGLMGFGKTGKAVASVLLQSDEVKLQWVVRRSHNLEHRSVPEFLGINARDPGMIYSFEEYTAQQLLDRLPVDVIIDFS
SEQGVDYYGEEARGRKIAVVSAISEYSPEKREYLKYLAEETRVVWSPNITIGINFLMIAAKVLKNIAPYTDIEIVEEHFK
GKPEVSGTARKIALALGLPEGAIKTIRAGGIIGIHEILFGFPYQTVRLKHESITREAFGNGVLFAARHVIEQEAGLYGME
DLMIPYFNLGG
>Mature_251_residues
MKVGLMGFGKTGKAVASVLLQSDEVKLQWVVRRSHNLEHRSVPEFLGINARDPGMIYSFEEYTAQQLLDRLPVDVIIDFS
SEQGVDYYGEEARGRKIAVVSAISEYSPEKREYLKYLAEETRVVWSPNITIGINFLMIAAKVLKNIAPYTDIEIVEEHFK
GKPEVSGTARKIALALGLPEGAIKTIRAGGIIGIHEILFGFPYQTVRLKHESITREAFGNGVLFAARHVIEQEAGLYGME
DLMIPYFNLGG

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=208, Percent_Identity=26.4423076923077, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 27990; Mature: 27990

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVGLMGFGKTGKAVASVLLQSDEVKLQWVVRRSHNLEHRSVPEFLGINARDPGMIYSFE
CEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEHHCCCCCCCCHHHHCCCCCCCCEEEEHH
EYTAQQLLDRLPVDVIIDFSSEQGVDYYGEEARGRKIAVVSAISEYSPEKREYLKYLAEE
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHC
TRVVWSPNITIGINFLMIAAKVLKNIAPYTDIEIVEEHFKGKPEVSGTARKIALALGLPE
CEEEECCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHEEEEEECCCH
GAIKTIRAGGIIGIHEILFGFPYQTVRLKHESITREAFGNGVLFAARHVIEQEAGLYGME
HHHHHHHCCCEEEHHHHHHCCCCHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH
DLMIPYFNLGG
HHCCCCCCCCC
>Mature Secondary Structure
MKVGLMGFGKTGKAVASVLLQSDEVKLQWVVRRSHNLEHRSVPEFLGINARDPGMIYSFE
CEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEHHCCCCCCCCHHHHCCCCCCCCEEEEHH
EYTAQQLLDRLPVDVIIDFSSEQGVDYYGEEARGRKIAVVSAISEYSPEKREYLKYLAEE
HHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEEHHHCCCHHHHHHHHHHHC
TRVVWSPNITIGINFLMIAAKVLKNIAPYTDIEIVEEHFKGKPEVSGTARKIALALGLPE
CEEEECCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHEEEEEECCCH
GAIKTIRAGGIIGIHEILFGFPYQTVRLKHESITREAFGNGVLFAARHVIEQEAGLYGME
HHHHHHHCCCEEEHHHHHHCCCCHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH
DLMIPYFNLGG
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]