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The map label for this gene is yfcD [C]

Identifier: 118581652

GI number: 118581652

Start: 3572542

End: 3573078

Strand: Reverse

Name: yfcD [C]

Synonym: Ppro_3251

Alternate gene names: 118581652

Gene position: 3573078-3572542 (Counterclockwise)

Preceding gene: 118581653

Following gene: 118581649

Centisome position: 89.15

GC content: 59.03

Gene sequence:

>537_bases
ATGACAGTTGAATGGTTTGATATTGTTGATGAAAACGGAACTGCCCTCGACAGGGCGACCCGAGCCCGCTGTCACGACGG
CTCGAAGCTGCTGCACCCGGTGGTGCACGTGCACGTCTTTAACTCCGGGGGCAAGCTGCTGCTGCAGAAGCGGAAGCTCA
CCAAGGACATCCAGCCCGGCAAATGGGACACCTCCGTCGGCGGGCACATCCAGTCCGGTGAGTTGTTGGAGGACGCCATA
CAACGGGAGGTGCTGGAAGAGATCGGGATAGAGATCGATCCGGCGCGCCTGCGGCCGCTCGGCCGCTACCTGTTCGAATC
GGAGATAGAGCGCGAGTACGTCTACTCCTACGCCTGTACCCATGATGGCCCGTTCCGTATTCAGGAAGAGGAGATAGACG
AGGTGCGTTTCCTTGATATCACGGAAATCGATGACCTGATCGCCACTGGCGAGACCACGCCAAACTTCAATCGGGAGGCG
GATTTGTTGCGGAAGGAGAAGTTGTTGGGGGAGCGGGCCGGTGTCGGGCTTCCATGA

Upstream 100 bases:

>100_bases
CAGTGCCATAGGAACCGCGACCACCTCACATGCGGGGTCCCAATAATAGCAGAAAGGCTGACCTGGCTGCGCAGTTCTCC
TGGGAAAGAGGAATGTCACG

Downstream 100 bases:

>100_bases
TGGCAGGCCTTCGGCTTGATCATGACGGCACGGAAGCCCCCAGAGTGCGATCTAATTGATTAGCAAGCAACGTCCCGCCA
GCTTTCCCTGGCAAAGGTCA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MTVEWFDIVDENGTALDRATRARCHDGSKLLHPVVHVHVFNSGGKLLLQKRKLTKDIQPGKWDTSVGGHIQSGELLEDAI
QREVLEEIGIEIDPARLRPLGRYLFESEIEREYVYSYACTHDGPFRIQEEEIDEVRFLDITEIDDLIATGETTPNFNREA
DLLRKEKLLGERAGVGLP

Sequences:

>Translated_178_residues
MTVEWFDIVDENGTALDRATRARCHDGSKLLHPVVHVHVFNSGGKLLLQKRKLTKDIQPGKWDTSVGGHIQSGELLEDAI
QREVLEEIGIEIDPARLRPLGRYLFESEIEREYVYSYACTHDGPFRIQEEEIDEVRFLDITEIDDLIATGETTPNFNREA
DLLRKEKLLGERAGVGLP
>Mature_177_residues
TVEWFDIVDENGTALDRATRARCHDGSKLLHPVVHVHVFNSGGKLLLQKRKLTKDIQPGKWDTSVGGHIQSGELLEDAIQ
REVLEEIGIEIDPARLRPLGRYLFESEIEREYVYSYACTHDGPFRIQEEEIDEVRFLDITEIDDLIATGETTPNFNREAD
LLRKEKLLGERAGVGLP

Specific function: Unknown

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Escherichia coli, GI1788637, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789255, Length=147, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.-.- [C]

Molecular weight: Translated: 20252; Mature: 20121

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVEWFDIVDENGTALDRATRARCHDGSKLLHPVVHVHVFNSGGKLLLQKRKLTKDIQPG
CCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEHHHHHHCCCCCC
KWDTSVGGHIQSGELLEDAIQREVLEEIGIEIDPARLRPLGRYLFESEIEREYVYSYACT
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHEEEC
HDGPFRIQEEEIDEVRFLDITEIDDLIATGETTPNFNREADLLRKEKLLGERAGVGLP
CCCCCEECHHHHCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVEWFDIVDENGTALDRATRARCHDGSKLLHPVVHVHVFNSGGKLLLQKRKLTKDIQPG
CEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEHHHHHHCCCCCC
KWDTSVGGHIQSGELLEDAIQREVLEEIGIEIDPARLRPLGRYLFESEIEREYVYSYACT
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHHHHHEEEC
HDGPFRIQEEEIDEVRFLDITEIDDLIATGETTPNFNREADLLRKEKLLGERAGVGLP
CCCCCEECHHHHCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]