Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 118581479

GI number: 118581479

Start: 3365089

End: 3365535

Strand: Direct

Name: (hspc4-1 [H]

Synonym: Ppro_3076

Alternate gene names: 118581479

Gene position: 3365089-3365535 (Clockwise)

Preceding gene: 118581477

Following gene: 118581480

Centisome position: 83.96

GC content: 55.26

Gene sequence:

>447_bases
ATGGCACTCGTGAAGTACAACCCCTTGAGAGAACTACGCGGCATGCAGGAGCAGATGAATCGTCTCCTCAATCTTTCCTG
GAACCACGATCTGGCCGGTGAAGATCTGAAAGAGGGTCTCTGGCAGCCTGCGGTGGATATCTACGAGACCGAGGACTCCA
TCGTCATCAAGGCGGAACTGCCGGATGTGGAGCAGAAGGACATCGAGGTGCGCATCGAAGACAACACCCTGACCCTGAAG
GGCGAGAGGAAGCATGGCGGGGAGGTAAAAAAGGAGAACTACCACCGCATCGAGCGCTACTTCGGCTTCTTCCAGCGCAG
CTTCAGCCTTCCGGCCAATATCCAGCAGGACAATGTCAGCGCCACATGCGACAGGGGGGTGCTGACCATAACGCTCCCCA
AGAAAGAGGAGACCAAACCGAAACAGATCAAGGTCGACGTAAAATAA

Upstream 100 bases:

>100_bases
GGTCTCATCTCCCCCCCTTGACAACCCAAAAACAGTCATTACCTTTTAAAGTGGGGTGGCACCCCGCACCAGCACCTAAC
CCAACAAGGAGGATACCACT

Downstream 100 bases:

>100_bases
GGGACAACGGCTCCAGACCGGAACGGGGAGAGCCGCACAATGCCGGCCCCCCCCGTTCTTCGTGGAGTACCAGCCTGCCG
CCGACAGGTATCTCCCCCCC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MALVKYNPLRELRGMQEQMNRLLNLSWNHDLAGEDLKEGLWQPAVDIYETEDSIVIKAELPDVEQKDIEVRIEDNTLTLK
GERKHGGEVKKENYHRIERYFGFFQRSFSLPANIQQDNVSATCDRGVLTITLPKKEETKPKQIKVDVK

Sequences:

>Translated_148_residues
MALVKYNPLRELRGMQEQMNRLLNLSWNHDLAGEDLKEGLWQPAVDIYETEDSIVIKAELPDVEQKDIEVRIEDNTLTLK
GERKHGGEVKKENYHRIERYFGFFQRSFSLPANIQQDNVSATCDRGVLTITLPKKEETKPKQIKVDVK
>Mature_147_residues
ALVKYNPLRELRGMQEQMNRLLNLSWNHDLAGEDLKEGLWQPAVDIYETEDSIVIKAELPDVEQKDIEVRIEDNTLTLKG
ERKHGGEVKKENYHRIERYFGFFQRSFSLPANIQQDNVSATCDRGVLTITLPKKEETKPKQIKVDVK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17211; Mature: 17080

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVKYNPLRELRGMQEQMNRLLNLSWNHDLAGEDLKEGLWQPAVDIYETEDSIVIKAEL
CCEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCEEEEEEC
PDVEQKDIEVRIEDNTLTLKGERKHGGEVKKENYHRIERYFGFFQRSFSLPANIQQDNVS
CCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATCDRGVLTITLPKKEETKPKQIKVDVK
EECCCCEEEEEECCCCCCCCCEEEEECC
>Mature Secondary Structure 
ALVKYNPLRELRGMQEQMNRLLNLSWNHDLAGEDLKEGLWQPAVDIYETEDSIVIKAEL
CEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCEEEEEEC
PDVEQKDIEVRIEDNTLTLKGERKHGGEVKKENYHRIERYFGFFQRSFSLPANIQQDNVS
CCCCCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
ATCDRGVLTITLPKKEETKPKQIKVDVK
EECCCCEEEEEECCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA