| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is pdtaS [H]
Identifier: 118581414
GI number: 118581414
Start: 3283897
End: 3286248
Strand: Reverse
Name: pdtaS [H]
Synonym: Ppro_3009
Alternate gene names: 118581414
Gene position: 3286248-3283897 (Counterclockwise)
Preceding gene: 118581415
Following gene: 118581413
Centisome position: 81.99
GC content: 62.2
Gene sequence:
>2352_bases ATGACTGAGCAGGAAAGCCAGAGCGTGATCGACCGTTTGACCGAGGCGCTGCGGAAAGCCAGGGAGGGAGACTGTACCCT GCTCCTGGAAGTTGCCGACGGGGGCGATGACATCGATGCCCTGAGCCGTGAGGTCAGGCTCCTCGTCGAGAGCATGCGGG GACATGCGGACGCCCGGGCCGTTGCCGAAGCCGAGCTCAGGGAGTGTCGGGAATCCTGCCGCCGCCTGAAGGCCAATATT CCCGGCATGGTATACCTGTTCGCGCTGCACCCGGACGGGACGTTTTCCTTTCCCTCGGTGAGCGATGCCTCTGGGGAGCT GTTCGCCATCGCTCCGCACGAACTCATGGCCGATGTCGGACTCCTCACCAGGCTGATCCACCCCGATGATCGCGACAGGT TCTTCGCATCCGTCAGGCGTTCCGCCGAGACGCTCGCTCCCTGGCGGGAGGAGATCCGGCACATCGTGCATGGCGAAGTA CGCTGGTACGACTGCATTTCCCGCCCCGAGCGGCATGCCAACGGAGATATCGTCTGGGACGGCATCATCCTGGAAATAAC CGGCCGCAAGCGCGCGGAAGAGAGGCTGAGCGAACAGCTCCACTTCCTCCAGCAGTTGCTGGATACCATCCCGCTGCCGG TGTTTTACAAGGATACGGATGGGGTGTACCTGGGGTGCAACTCTGCCTTCGAGCTGTTCTGCGGCTTTTCCAGGGAGCGT ATCGTCGGCAGGACGGTCCATGACCTGGCGCCGAGCCAGCGGGCAGATGTCTACCAGGAGGCCGACGCCGCCCTGTTTGA TGCGCCCGGGGTGCAGGTCTATGAGGCGGAGTTCCAGAACAGGGACGGCTCCACGCGCGATGTTATCTTCAACAAGGCCA CCTTTGTGGATCCGGAGAACCGGGTGGCCGGTCTGGTCGGCGCGATCACGGACATAAGCGGGCGCAGACGGGCCGAGCGC GAGCTGTTGCTCAAAAATGACATGCTGCGTGCCATCATTCAGGCCGCCCCCACGGCGATCATCGGTCTGGACCTGGACGG AAATGTGTGCAACGTCTGGAATCCGGCGGCGGAACGGATGCTGGGGTGGAGCGCCGCAGAGGTCATGGGAAAACCGCTCC CCGGTATGGATCCGGAGCAGCGGGAAGAGTTCAGGGACTTCCAGGAGTGGATTCGCGGTGGCAGAATACTGGACGGCGTC GAGGTCAGGCGCCACCGCCAGGACGGCTCTCCCATGGATTGCAGCATCTACGCCTCGCCGCTGCATGACACCGAGGGGCG CATCGTTGGCAGCATCGCCGTGCTGGTTGATATTACCGAGCGCAAGCAGGTGGAAGAGTCGCTGCGCCTGGCAAACCTGA TCGTGGAGAACAGCCCGCTGGTGCTGTTCCGCTGGCGGGCGACCGAGGGGTGGCCGGTGGAGCTGGTTTCCCGTAATGTG ACCCGTTTCGGCTATACGCCGGACGAGCTGATTACCGGTGTGGTCCCTTTCTCCGCCCTGGTGCATCCCGATGACCTGCG GCAGGTCGCCGCCGAGGTGGCCGAGTTTGTCCGTCAGGGGGTTGATCGCTTTCAGCAGGAGTACCGCATTGTCACCAAAG GGGGTGCTGTTCGCTGGATCGACGACCGGTCGGCCGTGGAACGTGACAGCCAGGGGCGCATCAGCCACTTCCAGGGAGTG GTGCTGGATATCACCGAGCGCAAGCTGGCTGAGGAGAAAATCCGGGCCGCGCTGACGGAAAAGGTGGTCCTTTTGAAGGA GATCCACCACCGGGTCAAGAACAACCTGCAGATAATCTCCACCCTGCTGGACCTGCAGGCCGAATCCGTGCGGGATGAGG GGGCGCTATGCGCCTTCCGGGAGAGCCAAGACCGTATCAGGGCCATGGCGCTGGTGCACGAGAAGCTCTACCGGACCGAG GACCTCTCCTTCATTGATTTTTCGGGGTACATCGAGAGCCTGACCGCCCATCTCTACAACAGTTATGCCATCGATTTCGG GCGCGTCTCCTTCTCCATTGACGCGGGTAACGTCTGCCTGAGTATCGATCAGGCCATTCCCTGCGGGTTGATCATCAGCG AACTGGTCTCCAATTCCCTGAAGTACGCTTTTCCCGGAAGCGCGGCGGGGAATATCAGCGTCAGCATTCGCGAACAAGGG GACGGCATGGTCTCGTTGACGGTTGCCGACAGCGGTGTCGGCCTGCCCGTCAACCTGGATTTCACCGCCAGCGAGACCCT GGGGCTGCAACTGGTCAGGATGCTGGTCAAACAGCTCAGGGGAGAGATTGCTCTGGACAGTTCCGGTGGTGCCCGGTTTA GCATCCGCTTTCCGATGAGTCCCGCTGGATGA
Upstream 100 bases:
>100_bases GTGGGACGGCATTCACCATCAGTTTCCGGGGGATGCAGCAGGGGGGAGGGGTGGTTCAGGTCGCGGATGACGCGAAGCGG ACATCCTGAAGGACGGTGCC
Downstream 100 bases:
>100_bases GAGGGAACGGGCGAGCCGCGGGCGGAACAGCCATGGCGTGGTCCGCAACGCCGGGATCGTGTTATCTGTGCCATGCTATT GGTACTATGCTGCGAAGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 782
Protein sequence:
>783_residues MTEQESQSVIDRLTEALRKAREGDCTLLLEVADGGDDIDALSREVRLLVESMRGHADARAVAEAELRECRESCRRLKANI PGMVYLFALHPDGTFSFPSVSDASGELFAIAPHELMADVGLLTRLIHPDDRDRFFASVRRSAETLAPWREEIRHIVHGEV RWYDCISRPERHANGDIVWDGIILEITGRKRAEERLSEQLHFLQQLLDTIPLPVFYKDTDGVYLGCNSAFELFCGFSRER IVGRTVHDLAPSQRADVYQEADAALFDAPGVQVYEAEFQNRDGSTRDVIFNKATFVDPENRVAGLVGAITDISGRRRAER ELLLKNDMLRAIIQAAPTAIIGLDLDGNVCNVWNPAAERMLGWSAAEVMGKPLPGMDPEQREEFRDFQEWIRGGRILDGV EVRRHRQDGSPMDCSIYASPLHDTEGRIVGSIAVLVDITERKQVEESLRLANLIVENSPLVLFRWRATEGWPVELVSRNV TRFGYTPDELITGVVPFSALVHPDDLRQVAAEVAEFVRQGVDRFQQEYRIVTKGGAVRWIDDRSAVERDSQGRISHFQGV VLDITERKLAEEKIRAALTEKVVLLKEIHHRVKNNLQIISTLLDLQAESVRDEGALCAFRESQDRIRAMALVHEKLYRTE DLSFIDFSGYIESLTAHLYNSYAIDFGRVSFSIDAGNVCLSIDQAIPCGLIISELVSNSLKYAFPGSAAGNISVSIREQG DGMVSLTVADSGVGLPVNLDFTASETLGLQLVRMLVKQLRGEIALDSSGGARFSIRFPMSPAG
Sequences:
>Translated_783_residues MTEQESQSVIDRLTEALRKAREGDCTLLLEVADGGDDIDALSREVRLLVESMRGHADARAVAEAELRECRESCRRLKANI PGMVYLFALHPDGTFSFPSVSDASGELFAIAPHELMADVGLLTRLIHPDDRDRFFASVRRSAETLAPWREEIRHIVHGEV RWYDCISRPERHANGDIVWDGIILEITGRKRAEERLSEQLHFLQQLLDTIPLPVFYKDTDGVYLGCNSAFELFCGFSRER IVGRTVHDLAPSQRADVYQEADAALFDAPGVQVYEAEFQNRDGSTRDVIFNKATFVDPENRVAGLVGAITDISGRRRAER ELLLKNDMLRAIIQAAPTAIIGLDLDGNVCNVWNPAAERMLGWSAAEVMGKPLPGMDPEQREEFRDFQEWIRGGRILDGV EVRRHRQDGSPMDCSIYASPLHDTEGRIVGSIAVLVDITERKQVEESLRLANLIVENSPLVLFRWRATEGWPVELVSRNV TRFGYTPDELITGVVPFSALVHPDDLRQVAAEVAEFVRQGVDRFQQEYRIVTKGGAVRWIDDRSAVERDSQGRISHFQGV VLDITERKLAEEKIRAALTEKVVLLKEIHHRVKNNLQIISTLLDLQAESVRDEGALCAFRESQDRIRAMALVHEKLYRTE DLSFIDFSGYIESLTAHLYNSYAIDFGRVSFSIDAGNVCLSIDQAIPCGLIISELVSNSLKYAFPGSAAGNISVSIREQG DGMVSLTVADSGVGLPVNLDFTASETLGLQLVRMLVKQLRGEIALDSSGGARFSIRFPMSPAG >Mature_782_residues TEQESQSVIDRLTEALRKAREGDCTLLLEVADGGDDIDALSREVRLLVESMRGHADARAVAEAELRECRESCRRLKANIP GMVYLFALHPDGTFSFPSVSDASGELFAIAPHELMADVGLLTRLIHPDDRDRFFASVRRSAETLAPWREEIRHIVHGEVR WYDCISRPERHANGDIVWDGIILEITGRKRAEERLSEQLHFLQQLLDTIPLPVFYKDTDGVYLGCNSAFELFCGFSRERI VGRTVHDLAPSQRADVYQEADAALFDAPGVQVYEAEFQNRDGSTRDVIFNKATFVDPENRVAGLVGAITDISGRRRAERE LLLKNDMLRAIIQAAPTAIIGLDLDGNVCNVWNPAAERMLGWSAAEVMGKPLPGMDPEQREEFRDFQEWIRGGRILDGVE VRRHRQDGSPMDCSIYASPLHDTEGRIVGSIAVLVDITERKQVEESLRLANLIVENSPLVLFRWRATEGWPVELVSRNVT RFGYTPDELITGVVPFSALVHPDDLRQVAAEVAEFVRQGVDRFQQEYRIVTKGGAVRWIDDRSAVERDSQGRISHFQGVV LDITERKLAEEKIRAALTEKVVLLKEIHHRVKNNLQIISTLLDLQAESVRDEGALCAFRESQDRIRAMALVHEKLYRTED LSFIDFSGYIESLTAHLYNSYAIDFGRVSFSIDAGNVCLSIDQAIPCGLIISELVSNSLKYAFPGSAAGNISVSIREQGD GMVSLTVADSGVGLPVNLDFTASETLGLQLVRMLVKQLRGEIALDSSGGARFSIRFPMSPAG
Specific function: Member of the two-component regulatory system pdtaR/pdtaS. Autophosphorylates, probably on a histidine residue, and transfers its phosphate group to pdtaR [H]
COG id: COG3920
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR022066 - InterPro: IPR011495 - InterPro: IPR005467 [H]
Pfam domain/function: PF12282 H_kinase_N; PF02518 HATPase_c; PF07568 HisKA_2 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 87369; Mature: 87238
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQESQSVIDRLTEALRKAREGDCTLLLEVADGGDDIDALSREVRLLVESMRGHADARA CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHH VAEAELRECRESCRRLKANIPGMVYLFALHPDGTFSFPSVSDASGELFAIAPHELMADVG HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHH LLTRLIHPDDRDRFFASVRRSAETLAPWREEIRHIVHGEVRWYDCISRPERHANGDIVWD HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEC GIILEITGRKRAEERLSEQLHFLQQLLDTIPLPVFYKDTDGVYLGCNSAFELFCGFSRER CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHHHHCCCHHH IVGRTVHDLAPSQRADVYQEADAALFDAPGVQVYEAEFQNRDGSTRDVIFNKATFVDPEN HHCCHHHHCCCCHHHHHHHHCCCCEECCCCCEEEEEHHCCCCCCCHHEEEECEEECCCCH RVAGLVGAITDISGRRRAERELLLKNDMLRAIIQAAPTAIIGLDLDGNVCNVWNPAAERM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHH LGWSAAEVMGKPLPGMDPEQREEFRDFQEWIRGGRILDGVEVRRHRQDGSPMDCSIYASP HCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHCCCCCCCCEEEEECC LHDTEGRIVGSIAVLVDITERKQVEESLRLANLIVENSPLVLFRWRATEGWPVELVSRNV CCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCC TRFGYTPDELITGVVPFSALVHPDDLRQVAAEVAEFVRQGVDRFQQEYRIVTKGGAVRWI HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEEEE DDRSAVERDSQGRISHFQGVVLDITERKLAEEKIRAALTEKVVLLKEIHHRVKNNLQIIS CCHHHHCCCCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TLLDLQAESVRDEGALCAFRESQDRIRAMALVHEKLYRTEDLSFIDFSGYIESLTAHLYN HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH SYAIDFGRVSFSIDAGNVCLSIDQAIPCGLIISELVSNSLKYAFPGSAAGNISVSIREQG HHEEEECEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC DGMVSLTVADSGVGLPVNLDFTASETLGLQLVRMLVKQLRGEIALDSSGGARFSIRFPMS CCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCC PAG CCC >Mature Secondary Structure TEQESQSVIDRLTEALRKAREGDCTLLLEVADGGDDIDALSREVRLLVESMRGHADARA CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHH VAEAELRECRESCRRLKANIPGMVYLFALHPDGTFSFPSVSDASGELFAIAPHELMADVG HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHH LLTRLIHPDDRDRFFASVRRSAETLAPWREEIRHIVHGEVRWYDCISRPERHANGDIVWD HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEC GIILEITGRKRAEERLSEQLHFLQQLLDTIPLPVFYKDTDGVYLGCNSAFELFCGFSRER CEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEECCHHHHHHHCCCHHH IVGRTVHDLAPSQRADVYQEADAALFDAPGVQVYEAEFQNRDGSTRDVIFNKATFVDPEN HHCCHHHHCCCCHHHHHHHHCCCCEECCCCCEEEEEHHCCCCCCCHHEEEECEEECCCCH RVAGLVGAITDISGRRRAERELLLKNDMLRAIIQAAPTAIIGLDLDGNVCNVWNPAAERM HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEECCCCHHHHHH LGWSAAEVMGKPLPGMDPEQREEFRDFQEWIRGGRILDGVEVRRHRQDGSPMDCSIYASP HCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHCCCCCCCCEEEEECC LHDTEGRIVGSIAVLVDITERKQVEESLRLANLIVENSPLVLFRWRATEGWPVELVSRNV CCCCCCCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHCCC TRFGYTPDELITGVVPFSALVHPDDLRQVAAEVAEFVRQGVDRFQQEYRIVTKGGAVRWI HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCEEEEE DDRSAVERDSQGRISHFQGVVLDITERKLAEEKIRAALTEKVVLLKEIHHRVKNNLQIIS CCHHHHCCCCCCCHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH TLLDLQAESVRDEGALCAFRESQDRIRAMALVHEKLYRTEDLSFIDFSGYIESLTAHLYN HHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH SYAIDFGRVSFSIDAGNVCLSIDQAIPCGLIISELVSNSLKYAFPGSAAGNISVSIREQG HHEEEECEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC DGMVSLTVADSGVGLPVNLDFTASETLGLQLVRMLVKQLRGEIALDSSGGARFSIRFPMS CCEEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCC PAG CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]