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The map label for this gene is degT [H]

Identifier: 118581279

GI number: 118581279

Start: 3145185

End: 3146300

Strand: Reverse

Name: degT [H]

Synonym: Ppro_2874

Alternate gene names: 118581279

Gene position: 3146300-3145185 (Counterclockwise)

Preceding gene: 118581280

Following gene: 118581278

Centisome position: 78.5

GC content: 56.81

Gene sequence:

>1116_bases
ATGGTGAATGTACCCTTTATCGATCTCCATGCCCAGTATGAGTCAATTCGGGGTGAAATCACGGATGCAGTGCAAGAGGT
GCTGGATAGCAGCGCCTTTGTCGGCGGGCCTTTTGTCGAAAAATTCGAGGAGTCCTTTGCTCGATTCTGCGGCACTGCCC
ATGCGGTGGCAGTCAGCAGCGGCACATCGGCGCTCTGGATGACCCTCATCTGTCTCGGTATTGGCCCGGGTGACGAGGTC
ATAACCGTGCCCAACACCTTCATAGCCACTGCCGAGGCAATCAGTTTGTGCGGCGCACGCCCGGTTTTTGTGGATGTGGA
GCAAGACTCCTGCACGCTTGACCCTGGATTGCTCCAGGCGGCCGTCACGCCGAACACGAAGGCGATCATTCCCGTGCACC
TCTTTGGTCAACCCGCGAATATGGATCCGATCATGGCGTTCGCCGCGGAGCGCAACCTCTTCGTCATCGAGGATGCCTGC
CAGGCCCACGGAGCCCGGTACAGGGACAGACCCGTGGGTTCCATGGGCGACGCCGCCTGTTTCAGCTTTTATCCGGGCAA
GAACCTTGGCGCCTACGGAGAGGCGGGCGCGGTTACGACCAACAATGCGGAACTGGCCGGCAACATACGCAGGATGCGCG
ATCACGGCCAGTCACGCAAATACTATCACGGCATGATCGGCTGGAATGGCCGCATGGATGGCATCCAGGGCGCGGTCCTC
AGCGTGAAGCTTGAGTATCTTGCGTCGTGGAATGAAAAACGCCGCAAGAATGCCGCGCTGTACAACGATTTCCTCCATGT
CCATGAGGGGGTCATACTGCCGGTGGAGATGGAGTATGCACGGCATATCTATCACATCTACGCCATTCGCGTGCAGAACA
GGGACCGCGTCTTGGCCAGACTGAATGAAAAGGGGATCAACTGCGGCATTCACTATCCGCTGCCGATACATCTGCAGGAT
GCCTATCGTTCTTTCGGTCTTGCGAAAGGGACGTTCCCGGTTACTGAACAAGTCGCTGATCAGTTGCTTTCATTGCCCAT
GTACCCTGAACTTACCCATGAGCAGATTGAGTATGTTGCTCGAGAGACGAAGAATGTGACCATGGCCAGTCGATGA

Upstream 100 bases:

>100_bases
GAGATGCATAGCGCCATAGGAACGTCGCCGTAAAAGACCGACACAGCAGGCCATGAGCAGCTTGTCGACCTTCATGAGTC
AGGGAGCGAAGGAGAGCAAG

Downstream 100 bases:

>100_bases
TGTCAAGAGGTGTAGTATGCACTCCCTGCTTGCGGAAGGACAGGTTACGTACGCGCAGGTGACAGGCCCGCGTATTGCGC
AAGCCGGGCATAGCATTGAC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MVNVPFIDLHAQYESIRGEITDAVQEVLDSSAFVGGPFVEKFEESFARFCGTAHAVAVSSGTSALWMTLICLGIGPGDEV
ITVPNTFIATAEAISLCGARPVFVDVEQDSCTLDPGLLQAAVTPNTKAIIPVHLFGQPANMDPIMAFAAERNLFVIEDAC
QAHGARYRDRPVGSMGDAACFSFYPGKNLGAYGEAGAVTTNNAELAGNIRRMRDHGQSRKYYHGMIGWNGRMDGIQGAVL
SVKLEYLASWNEKRRKNAALYNDFLHVHEGVILPVEMEYARHIYHIYAIRVQNRDRVLARLNEKGINCGIHYPLPIHLQD
AYRSFGLAKGTFPVTEQVADQLLSLPMYPELTHEQIEYVARETKNVTMASR

Sequences:

>Translated_371_residues
MVNVPFIDLHAQYESIRGEITDAVQEVLDSSAFVGGPFVEKFEESFARFCGTAHAVAVSSGTSALWMTLICLGIGPGDEV
ITVPNTFIATAEAISLCGARPVFVDVEQDSCTLDPGLLQAAVTPNTKAIIPVHLFGQPANMDPIMAFAAERNLFVIEDAC
QAHGARYRDRPVGSMGDAACFSFYPGKNLGAYGEAGAVTTNNAELAGNIRRMRDHGQSRKYYHGMIGWNGRMDGIQGAVL
SVKLEYLASWNEKRRKNAALYNDFLHVHEGVILPVEMEYARHIYHIYAIRVQNRDRVLARLNEKGINCGIHYPLPIHLQD
AYRSFGLAKGTFPVTEQVADQLLSLPMYPELTHEQIEYVARETKNVTMASR
>Mature_371_residues
MVNVPFIDLHAQYESIRGEITDAVQEVLDSSAFVGGPFVEKFEESFARFCGTAHAVAVSSGTSALWMTLICLGIGPGDEV
ITVPNTFIATAEAISLCGARPVFVDVEQDSCTLDPGLLQAAVTPNTKAIIPVHLFGQPANMDPIMAFAAERNLFVIEDAC
QAHGARYRDRPVGSMGDAACFSFYPGKNLGAYGEAGAVTTNNAELAGNIRRMRDHGQSRKYYHGMIGWNGRMDGIQGAVL
SVKLEYLASWNEKRRKNAALYNDFLHVHEGVILPVEMEYARHIYHIYAIRVQNRDRVLARLNEKGINCGIHYPLPIHLQD
AYRSFGLAKGTFPVTEQVADQLLSLPMYPELTHEQIEYVARETKNVTMASR

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=355, Percent_Identity=35.2112676056338, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI2367285, Length=353, Percent_Identity=33.4277620396601, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 40925; Mature: 40925

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNVPFIDLHAQYESIRGEITDAVQEVLDSSAFVGGPFVEKFEESFARFCGTAHAVAVSS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
GTSALWMTLICLGIGPGDEVITVPNTFIATAEAISLCGARPVFVDVEQDSCTLDPGLLQA
CCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEE
AVTPNTKAIIPVHLFGQPANMDPIMAFAAERNLFVIEDACQAHGARYRDRPVGSMGDAAC
EECCCCCEEEEEEEECCCCCCCHHHHEECCCCEEEEECHHHHCCCCCCCCCCCCCCCCCE
FSFYPGKNLGAYGEAGAVTTNNAELAGNIRRMRDHGQSRKYYHGMIGWNGRMDGIQGAVL
EEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
SVKLEYLASWNEKRRKNAALYNDFLHVHEGVILPVEMEYARHIYHIYAIRVQNRDRVLAR
EEEEHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHEEEEEEEEECCCHHHHHH
LNEKGINCGIHYPLPIHLQDAYRSFGLAKGTFPVTEQVADQLLSLPMYPELTHEQIEYVA
HCCCCCCCEEECCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
RETKNVTMASR
HHCCCEEECCC
>Mature Secondary Structure
MVNVPFIDLHAQYESIRGEITDAVQEVLDSSAFVGGPFVEKFEESFARFCGTAHAVAVSS
CCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
GTSALWMTLICLGIGPGDEVITVPNTFIATAEAISLCGARPVFVDVEQDSCTLDPGLLQA
CCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHEEE
AVTPNTKAIIPVHLFGQPANMDPIMAFAAERNLFVIEDACQAHGARYRDRPVGSMGDAAC
EECCCCCEEEEEEEECCCCCCCHHHHEECCCCEEEEECHHHHCCCCCCCCCCCCCCCCCE
FSFYPGKNLGAYGEAGAVTTNNAELAGNIRRMRDHGQSRKYYHGMIGWNGRMDGIQGAVL
EEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEE
SVKLEYLASWNEKRRKNAALYNDFLHVHEGVILPVEMEYARHIYHIYAIRVQNRDRVLAR
EEEEHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHEEEEEEEEECCCHHHHHH
LNEKGINCGIHYPLPIHLQDAYRSFGLAKGTFPVTEQVADQLLSLPMYPELTHEQIEYVA
HCCCCCCCEEECCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHH
RETKNVTMASR
HHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]