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The map label for this gene is yagI [H]

Identifier: 118581239

GI number: 118581239

Start: 3099021

End: 3099803

Strand: Direct

Name: yagI [H]

Synonym: Ppro_2833

Alternate gene names: 118581239

Gene position: 3099021-3099803 (Clockwise)

Preceding gene: 118581236

Following gene: 118581240

Centisome position: 77.32

GC content: 53.77

Gene sequence:

>783_bases
ATGGCAAGAAAAGAAAAAACGGAATACCTCATCCAAGCTGTCTCCCATGCATTGGATCTTCTGGAGCAATTCCACGGCGA
TGTGGACGAACTGGGTGTCACCGAACTCAGCAAGCGACTCAAGCTCCACAAGAACAACGTTTTCAGGCTACTGGCAACCC
TTGAATCGCGCGGCTACATTGAGCAGAACAAGGTGACCGAGAACTATCGCCTGGGGCTCAAGACGCTGGAACTGGGACAG
ACTTTCATCCGTCAAATGGGACTCTTGCGTCAATCCAAACCAATATTGGAATCACTGGTCAGGGAATGCAACGAGACAAC
CTACGTAGCGATCCTCAAGGACTTCAACATCATCTATCTGGATGCCGTCGAAACGAGCATGACGGTGCGGGTCGTTCCCC
GAGTCGGTTCATGGCTGCCAGCCTACTGCACCGCCGCCGGCAAAATCCAGATCGCCCACATGAGCGACGAGGAACTTGAG
AATTACCTCGACTCACACGAACTCAAGGCATTTACCAACAATACCATCACCAACCGTGAGACCCTCAAGAAGCAGCTCAA
ACAGGTTGCCGAGCAGGGCTACGCCATCGACGACGAGGAACTGGATATCGGCGTCAAATGCGTAAGCGCGCCCATACGCG
ATTACACCCGCCGCATCATCGGGGCGGTCAGCATCTCCGGCCCTTCCATGCGTTTTGACACGGATCGCATGGAGAAGGAA
CTGATCCCGCTGACCCTGAAGGCATCCGAAGAGATCTCGGCCAAACTCGGTTTCCAGAAATAG

Upstream 100 bases:

>100_bases
ATTGACTAATATCAGCAATAATGATAATTTGCGCGTTTTCTTTTGGTCTCGAACCAAACACAACATAACACACCTTTATT
TAGTACAACAGGATACCATC

Downstream 100 bases:

>100_bases
GCTCAGAGGAAAGCAGATATACGGAGAGGCGGCCCCAGGGTCGCCTTTTTCGTTTACCAACGGATACAATGCGCCCCACA
CCAGCGAACAGTCATGGCAA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MARKEKTEYLIQAVSHALDLLEQFHGDVDELGVTELSKRLKLHKNNVFRLLATLESRGYIEQNKVTENYRLGLKTLELGQ
TFIRQMGLLRQSKPILESLVRECNETTYVAILKDFNIIYLDAVETSMTVRVVPRVGSWLPAYCTAAGKIQIAHMSDEELE
NYLDSHELKAFTNNTITNRETLKKQLKQVAEQGYAIDDEELDIGVKCVSAPIRDYTRRIIGAVSISGPSMRFDTDRMEKE
LIPLTLKASEEISAKLGFQK

Sequences:

>Translated_260_residues
MARKEKTEYLIQAVSHALDLLEQFHGDVDELGVTELSKRLKLHKNNVFRLLATLESRGYIEQNKVTENYRLGLKTLELGQ
TFIRQMGLLRQSKPILESLVRECNETTYVAILKDFNIIYLDAVETSMTVRVVPRVGSWLPAYCTAAGKIQIAHMSDEELE
NYLDSHELKAFTNNTITNRETLKKQLKQVAEQGYAIDDEELDIGVKCVSAPIRDYTRRIIGAVSISGPSMRFDTDRMEKE
LIPLTLKASEEISAKLGFQK
>Mature_259_residues
ARKEKTEYLIQAVSHALDLLEQFHGDVDELGVTELSKRLKLHKNNVFRLLATLESRGYIEQNKVTENYRLGLKTLELGQT
FIRQMGLLRQSKPILESLVRECNETTYVAILKDFNIIYLDAVETSMTVRVVPRVGSWLPAYCTAAGKIQIAHMSDEELEN
YLDSHELKAFTNNTITNRETLKKQLKQVAEQGYAIDDEELDIGVKCVSAPIRDYTRRIIGAVSISGPSMRFDTDRMEKEL
IPLTLKASEEISAKLGFQK

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=224, Percent_Identity=36.1607142857143, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1788131, Length=237, Percent_Identity=34.5991561181435, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI87082359, Length=249, Percent_Identity=31.3253012048193, Blast_Score=138, Evalue=3e-34,
Organism=Escherichia coli, GI1786715, Length=250, Percent_Identity=29.6, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789999, Length=265, Percent_Identity=30.5660377358491, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790752, Length=229, Percent_Identity=28.3842794759825, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788581, Length=250, Percent_Identity=22, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29597; Mature: 29466

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKEKTEYLIQAVSHALDLLEQFHGDVDELGVTELSKRLKLHKNNVFRLLATLESRGYI
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EQNKVTENYRLGLKTLELGQTFIRQMGLLRQSKPILESLVRECNETTYVAILKDFNIIYL
CHHCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEE
DAVETSMTVRVVPRVGSWLPAYCTAAGKIQIAHMSDEELENYLDSHELKAFTNNTITNRE
EEECCCEEEEEECCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHH
TLKKQLKQVAEQGYAIDDEELDIGVKCVSAPIRDYTRRIIGAVSISGPSMRFDTDRMEKE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHH
LIPLTLKASEEISAKLGFQK
HCCEEEECCHHHHHHCCCCC
>Mature Secondary Structure 
ARKEKTEYLIQAVSHALDLLEQFHGDVDELGVTELSKRLKLHKNNVFRLLATLESRGYI
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EQNKVTENYRLGLKTLELGQTFIRQMGLLRQSKPILESLVRECNETTYVAILKDFNIIYL
CHHCCCHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCEEEE
DAVETSMTVRVVPRVGSWLPAYCTAAGKIQIAHMSDEELENYLDSHELKAFTNNTITNRE
EEECCCEEEEEECCCCCCHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCHH
TLKKQLKQVAEQGYAIDDEELDIGVKCVSAPIRDYTRRIIGAVSISGPSMRFDTDRMEKE
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHH
LIPLTLKASEEISAKLGFQK
HCCEEEECCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]