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The map label for this gene is hypD2 [H]

Identifier: 118581185

GI number: 118581185

Start: 3039496

End: 3040587

Strand: Reverse

Name: hypD2 [H]

Synonym: Ppro_2778

Alternate gene names: 118581185

Gene position: 3040587-3039496 (Counterclockwise)

Preceding gene: 118581186

Following gene: 118581184

Centisome position: 75.86

GC content: 62.91

Gene sequence:

>1092_bases
ATGAATTATATGGATGAATTCCGCGACCGGGATGTGGTTCTCGGCTACGCGGCACAAATCAGGAAGCTGTCTGAGCAGCG
CCCGGAACCGATGGCTTTCATGGAGGTCTGCGGCACCCACACCATGTCCATCTACCAGTACGGCATCCGCAGCCTGCTTC
CGGAAGGGGTGCGGCTCATCTCGGGGCCCGGCTGTCCGGTCTGCGTCACCCCCAACCGCTACATCGACCGGGCAATAGCC
ATTAGCCGTCTTTCCGACACCATCATCACCACCTTCGGTGACATGCTGCGGGTTCCCGGTTCCAGTTCGTCACTGATGGA
GGAGCGCGCCAGGGGCGCGGATGTCAGGATTGTCTACTCGCCGCTGGACGCTGTGGCCATCGCCAGGAAGAATCCCTGTA
AAAGGGTCGTCTTTCTGGGGGTCGGCTTCGAGACAACGGCGCCCGCCATTGCCGCCAGCATCCTGGCCGCCACTGGGGAC
GGGCTTGCCAACTATCTGGTGCTGGCGGCCCACAAGACCATTCCCTTGCCCATGGAGCTACTCTCCAGCGACCCGGAACT
GAAGATCGACGGCTATATCTGCCCCGCCCATGTGAGCGCCATCATCGGCGCCAACGCCTTCCGCGGACTGGCAGAGCAGC
GCGGCGTTCCCTGCGTTGTGACCGGTTTCGAGCCGGCCGATGTCATGCAGGGAGTGGAGATGCTGGTACGGCAGGTGGTG
GAGGGGAAAAGCCGGGTGGAAAACCAGTACAGCAGGGTGGTGACCTGGGAAGGTAACTGCAAGGCCCAGTCTGTGCTGGC
CCAGGTGTTCAGCGTCTGTGATGCCGAGTGGCGCGGGATCGGCGTCATTCCGGGCAGTGGCCTGGAAATCGCAGCCGACT
ATGCCGCCTATGACGCGGAAAAAGTCCTGCCGGTTTCCGTGGAGGAGACCCGGGAGCACCAAGGGTGCCGCTGCGGCGAT
ATCCTCAGGGGGAAGGTGTCTCCCTTCGACTGTCCCCTCTTCGACCGAGCCTGCACCCCGGAATCACCCGTTGGGGCCTG
CATGGTGTCCAGCGAAGGGACCTGCGCCGCGGCGTACAAGTACGGCAGATAG

Upstream 100 bases:

>100_bases
CCGAGTCCGCAACAGCTTCGGCCTGAGTCGCTGATCACGGGGTGTCTGCTTTGGGAACCGGCCGGCTGGTTGGTCCAGCG
CAGGAAGATATGAGGTTGTC

Downstream 100 bases:

>100_bases
GCGAAAACTATTTTTAGTTCCGGCCTGGCCGGATCAGGAGCGATACGTGGACAACGACCTCATTCTACTGGGTCACGGCA
GCGGCGGGAAACTCTCCCAC

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MNYMDEFRDRDVVLGYAAQIRKLSEQRPEPMAFMEVCGTHTMSIYQYGIRSLLPEGVRLISGPGCPVCVTPNRYIDRAIA
ISRLSDTIITTFGDMLRVPGSSSSLMEERARGADVRIVYSPLDAVAIARKNPCKRVVFLGVGFETTAPAIAASILAATGD
GLANYLVLAAHKTIPLPMELLSSDPELKIDGYICPAHVSAIIGANAFRGLAEQRGVPCVVTGFEPADVMQGVEMLVRQVV
EGKSRVENQYSRVVTWEGNCKAQSVLAQVFSVCDAEWRGIGVIPGSGLEIAADYAAYDAEKVLPVSVEETREHQGCRCGD
ILRGKVSPFDCPLFDRACTPESPVGACMVSSEGTCAAAYKYGR

Sequences:

>Translated_363_residues
MNYMDEFRDRDVVLGYAAQIRKLSEQRPEPMAFMEVCGTHTMSIYQYGIRSLLPEGVRLISGPGCPVCVTPNRYIDRAIA
ISRLSDTIITTFGDMLRVPGSSSSLMEERARGADVRIVYSPLDAVAIARKNPCKRVVFLGVGFETTAPAIAASILAATGD
GLANYLVLAAHKTIPLPMELLSSDPELKIDGYICPAHVSAIIGANAFRGLAEQRGVPCVVTGFEPADVMQGVEMLVRQVV
EGKSRVENQYSRVVTWEGNCKAQSVLAQVFSVCDAEWRGIGVIPGSGLEIAADYAAYDAEKVLPVSVEETREHQGCRCGD
ILRGKVSPFDCPLFDRACTPESPVGACMVSSEGTCAAAYKYGR
>Mature_363_residues
MNYMDEFRDRDVVLGYAAQIRKLSEQRPEPMAFMEVCGTHTMSIYQYGIRSLLPEGVRLISGPGCPVCVTPNRYIDRAIA
ISRLSDTIITTFGDMLRVPGSSSSLMEERARGADVRIVYSPLDAVAIARKNPCKRVVFLGVGFETTAPAIAASILAATGD
GLANYLVLAAHKTIPLPMELLSSDPELKIDGYICPAHVSAIIGANAFRGLAEQRGVPCVVTGFEPADVMQGVEMLVRQVV
EGKSRVENQYSRVVTWEGNCKAQSVLAQVFSVCDAEWRGIGVIPGSGLEIAADYAAYDAEKVLPVSVEETREHQGCRCGD
ILRGKVSPFDCPLFDRACTPESPVGACMVSSEGTCAAAYKYGR

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=44.8087431693989, Blast_Score=331, Evalue=4e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 39200; Mature: 39200

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYMDEFRDRDVVLGYAAQIRKLSEQRPEPMAFMEVCGTHTMSIYQYGIRSLLPEGVRLI
CCCHHHHCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHEE
SGPGCPVCVTPNRYIDRAIAISRLSDTIITTFGDMLRVPGSSSSLMEERARGADVRIVYS
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEC
PLDAVAIARKNPCKRVVFLGVGFETTAPAIAASILAATGDGLANYLVLAAHKTIPLPMEL
CCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCHHH
LSSDPELKIDGYICPAHVSAIIGANAFRGLAEQRGVPCVVTGFEPADVMQGVEMLVRQVV
HCCCCCEEECCEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHH
EGKSRVENQYSRVVTWEGNCKAQSVLAQVFSVCDAEWRGIGVIPGSGLEIAADYAAYDAE
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEHHHHCCCC
KVLPVSVEETREHQGCRCGDILRGKVSPFDCPLFDRACTPESPVGACMVSSEGTCAAAYK
CEEECCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCC
YGR
CCC
>Mature Secondary Structure
MNYMDEFRDRDVVLGYAAQIRKLSEQRPEPMAFMEVCGTHTMSIYQYGIRSLLPEGVRLI
CCCHHHHCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHEE
SGPGCPVCVTPNRYIDRAIAISRLSDTIITTFGDMLRVPGSSSSLMEERARGADVRIVYS
CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEEC
PLDAVAIARKNPCKRVVFLGVGFETTAPAIAASILAATGDGLANYLVLAAHKTIPLPMEL
CCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCHHH
LSSDPELKIDGYICPAHVSAIIGANAFRGLAEQRGVPCVVTGFEPADVMQGVEMLVRQVV
HCCCCCEEECCEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHH
EGKSRVENQYSRVVTWEGNCKAQSVLAQVFSVCDAEWRGIGVIPGSGLEIAADYAAYDAE
HHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEHHHHCCCC
KVLPVSVEETREHQGCRCGDILRGKVSPFDCPLFDRACTPESPVGACMVSSEGTCAAAYK
CEEECCHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCC
YGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]