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The map label for this gene is xseB

Identifier: 118580819

GI number: 118580819

Start: 2603554

End: 2603781

Strand: Reverse

Name: xseB

Synonym: Ppro_2405

Alternate gene names: 118580819

Gene position: 2603781-2603554 (Counterclockwise)

Preceding gene: 118580820

Following gene: 118580818

Centisome position: 64.96

GC content: 58.77

Gene sequence:

>228_bases
ATGGCAACGGAAAAATTTGAAACAGCCCTGAAAAAACTGGAGGAAATCGTGCGCCGCCTGGAAGGAGGCTCGCTCTCCCT
GGACGAATCCCTCAAAGCCTTCGAAGAGGGGGTCAGGCACGCCTCTTTCTGCTCCAAGAAACTGGACGAGGCCGAGCGCC
GCGTGGAGGTGCTGCTGAAGCGCAAGGACGGCAGCTTCAGCCGCGAGCCGTTTCAGCCGGATGAGTAA

Upstream 100 bases:

>100_bases
GCCCACTGCCGGGTGGAGGGGGTGCAACTGCCGACCGAGCCCAAACCCTTGACGCATGCCGACGATTCTGAAATACTGTC
CGATCAATCAAGGAACGACC

Downstream 100 bases:

>100_bases
CAACATGAACCTGATAAAGGAAACGACATGGACCTGAAAGCATACCTGAAAGAGCAGTGCGCCCGCGTAGATGCGGCGCT
GGACAGCTACCTCCCCCGGG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 75; Mature: 74

Protein sequence:

>75_residues
MATEKFETALKKLEEIVRRLEGGSLSLDESLKAFEEGVRHASFCSKKLDEAERRVEVLLKRKDGSFSREPFQPDE

Sequences:

>Translated_75_residues
MATEKFETALKKLEEIVRRLEGGSLSLDESLKAFEEGVRHASFCSKKLDEAERRVEVLLKRKDGSFSREPFQPDE
>Mature_74_residues
ATEKFETALKKLEEIVRRLEGGSLSLDESLKAFEEGVRHASFCSKKLDEAERRVEVLLKRKDGSFSREPFQPDE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=74, Percent_Identity=48.6486486486487, Blast_Score=62, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PELPD (A1ARP1)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_902069.1
- ProteinModelPortal:   A1ARP1
- SMR:   A1ARP1
- STRING:   A1ARP1
- GeneID:   4572236
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_2405
- eggNOG:   NOG87517
- HOGENOM:   HBG728416
- OMA:   CSKKLNE
- ProtClustDB:   PRK14066
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8629; Mature: 8498

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATEKFETALKKLEEIVRRLEGGSLSLDESLKAFEEGVRHASFCSKKLDEAERRVEVLLK
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKDGSFSREPFQPDE
HCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATEKFETALKKLEEIVRRLEGGSLSLDESLKAFEEGVRHASFCSKKLDEAERRVEVLLK
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKDGSFSREPFQPDE
HCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA