| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is ygcB [H]
Identifier: 118580758
GI number: 118580758
Start: 2531914
End: 2534553
Strand: Reverse
Name: ygcB [H]
Synonym: Ppro_2343
Alternate gene names: 118580758
Gene position: 2534553-2531914 (Counterclockwise)
Preceding gene: 118580761
Following gene: 118580757
Centisome position: 63.24
GC content: 53.03
Gene sequence:
>2640_bases ATGGACAAAAAATTATCACTGATATGGGCAAAAACGGGAATGAACGGTGATGGAACGTGGCATCCTCTTATTTTCCATAT GCTTGATGTTGCGGCCTGTGCCGATGCGATTCTGGCGCGTGAACCGGATTCCACTCGTATCAGGATTGCGGCGATTCTGG GGTTGGAGTGGGAGATTGCCCGAGCGTGGATTTTGCTTGTGGTCGCTTGTCATGATCTAGGTAAGGCCTGTCCTGGTTTC CAGTGCAAATGGGAAAACATGACGGGGATAGATACGGGTCGGAGTCCAAATACGGATATCAATCACGCATATGTAAGCCA AATCGCTTTGACGGAAATTTTGCTGGAAAAGGGCTGGCCGGATGAACTGGCGGAGTTGGTAGCTGATGCTGTAGGGTGCC ACCATGGGAATCGAGCTTCATCAATTAGACTGAATTACTTGTCTGGCGACAGGCGCGCCATTGGTAAGGGTGACTGGACA CAAGCGCGCCTTGGGTTGGTTGATGCTGTACTGAATGTTTTCATGCCGGTCCAAAACCCGGTCAAGCAGACTCTTTCCGG TCCCGACTTTATGTTGCTGTCGGGACTGACCAGTTTTGCCGACTGGATCGGCTCCAATGAAGAATGGTTCCCCTTCGGAG GCGCTGAAGAGTGTGGGGATTTACCTGGATGGTTTCAAAAGCGCAGGCACAATGCTGATCTGGCCTTGGACGCAATCGGT TGGGAACCCAGGACACCACTTTCATCAGAGCCAAAGTCATTCCAGCAGGTTTTTGATTTTGTTCCCCGCCCCTTGCAGCA AGCTGTTGCAGATGTATTGGTTGGTTTAAGCGAACCCGCCATTATCCTCGTGGAAGCCCCCATGGGTGAGGGCAAAACCG AGGCAGCCTTCTTCGCGCATCTGGAACTGCAAAGGCGATTCGGTCATCGCGGCTTGTATGTGGCATTGCCGACAAAGGCC ACCGGCAATGCCATGTTCAAACGAACCATCAAATTCATACGCAGTCAAGGAACGCATCGAAAACTTGATCTGCAATTGTT GCATGGCGGAACCCTGCTCAATGACACCTTCCAGAACCTGCGCCTTTCAGGTATTCACGATCCGGAAACGGGTGGCGATA TACGCGCGGGAGAATGGTTCACAAACAAGAAGCGGGCGCTGCTCTCGGAATACGGTGTGGGAACGGTGGATCAGGCTCTT CTGCCAATTTTGCCGGTGCGCCACAATTTTGTCCGTTTGTGGGGGCTTGCCAATCGTGTGGTGGTATTCGATGAAATCCA CGCCTACGACGCCTACACCGGTACTTTGCTGATTCACCTGCTGCGCTGGCTCCTGGCCTTGGGTTCGTCGGTGGTACTTC TCTCCGCAACCCTTCCGCCCTCCATTCGACGGAAGTTGGCGGATGCGGTCTCTGCTGATTTACCCGCTCAAGAAACGCAA TATCCGCGCCTTTCCGTGTTCTGTCCCGGCAAAGAAGTGAATCAAATACATTTCGAGGCCGATCCTGGCCGTCGCCTTAC TTTGCGTTTGGTAGGGCTACCTTCGGATTTGCCAAGCATCCACAATGCATTGGTAGTGCATCTTGCCGGTGGCGGAATGG GGCTTGCCCTGCTCAATACGGTGCAACGAGCCCAAGACCTGTATCGACTTTTTTCTGAAGGGGAAGCGATGGAGTACGAA GGCCATCGTGTCGGTAAACGCTTGTCAGATGGCACCGAGGTGTTTCTTTTTCATGCCCGTTTTCCGGTTGACCGCCGTCA AAAGCGGGAGGACCAGGTACTGAAGGCCTTTGGGCAGAGTGGATGCCGGGATGAACGAAAGATTCTCATTGCCACCCAGG TAGCGGAACAGAGTCTTGACCTGGACTTTGACCTGATCGCAACCGATTTGGCGCCAATTGACCTCGTGCTCCAGCGAGCG GGGAGATTGTGGAGGCATGCGCGGAGCTTCAGGCCTGTTGAAGAACCTGTTCTTCTCGTTGCGGGGCTGGCGGGAGACGA ACCGCCATCATTCGAGAAACCGTTGTGGTGGGGCTCTGTGTATCGTGAAGACCTGCTCTTGAGCACCTGGTGTCTTTTGC ATACGAAACAGAATATAACTCTCCCGGACGAGATCGACTCCTTGGTTCAAGCGGTGTACGAAGAACAGGTCGATATCCCC GAGTTCCTGGCAGAACGGATGAATTGCGCGATTTTTGCTGAGGGCAAGGCCATATCCGAGCGCCAACAAGCCAATATGGC TATTATCGGATTCCCGGATGATGCCTCATGGAAGGAGGTCAAATTCGAGAAAGCCGATGAAGACGAGCCAGGATTGCATC GGAGCCTGGTTGCCCAGACCCGATTGGGGGAACCGTCTGTAATGGCGATCCCGATTTTTTCAGCTGACGAATTTGACCCG GCAAAAGAACTCACGTTCGATCTTAGTAAGGATTTTTTTCTGCGAGCCGTAAATCTTTCGCGTAAGGGTGTGGTCAAGAA GCTTCAGAAACGGGGAGTGCCGGAGGGGTGGAAAAAATCGTCCCTCTTGCGCAACTGTTTTCCGCTTGTCCTGGATGCAG AGGGACGATGGACTGAAGATGCAATGGTGCGACTGGATGATGATCTGGGGCTGGTATACCAATCAAAGGAGGCCGAATGA
Upstream 100 bases:
>100_bases TGGAAGGGTATTACAGGTATTGGGGGAAGGTGGAGAGGAATGGGGAGCGGTATCATCTGTTGGCTTATCATTGTCTGGAT GTGGCGGCGGTGGGAATCTT
Downstream 100 bases:
>100_bases GTCGATTCAACCTGATTGATGAGAAATGGATCCCGGTGAGATTCCCCGACGGAGCTCGTGAAGAATTGGGTATCCGCGAT ACGTTACTTCGATCCAAGGA
Product: CRISPR-associated helicase Cas3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 879; Mature: 879
Protein sequence:
>879_residues MDKKLSLIWAKTGMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIARAWILLVVACHDLGKACPGF QCKWENMTGIDTGRSPNTDINHAYVSQIALTEILLEKGWPDELAELVADAVGCHHGNRASSIRLNYLSGDRRAIGKGDWT QARLGLVDAVLNVFMPVQNPVKQTLSGPDFMLLSGLTSFADWIGSNEEWFPFGGAEECGDLPGWFQKRRHNADLALDAIG WEPRTPLSSEPKSFQQVFDFVPRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKA TGNAMFKRTIKFIRSQGTHRKLDLQLLHGGTLLNDTFQNLRLSGIHDPETGGDIRAGEWFTNKKRALLSEYGVGTVDQAL LPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGTLLIHLLRWLLALGSSVVLLSATLPPSIRRKLADAVSADLPAQETQ YPRLSVFCPGKEVNQIHFEADPGRRLTLRLVGLPSDLPSIHNALVVHLAGGGMGLALLNTVQRAQDLYRLFSEGEAMEYE GHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGCRDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRA GRLWRHARSFRPVEEPVLLVAGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNITLPDEIDSLVQAVYEEQVDIP EFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQTRLGEPSVMAIPIFSADEFDP AKELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKSSLLRNCFPLVLDAEGRWTEDAMVRLDDDLGLVYQSKEAE
Sequences:
>Translated_879_residues MDKKLSLIWAKTGMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIARAWILLVVACHDLGKACPGF QCKWENMTGIDTGRSPNTDINHAYVSQIALTEILLEKGWPDELAELVADAVGCHHGNRASSIRLNYLSGDRRAIGKGDWT QARLGLVDAVLNVFMPVQNPVKQTLSGPDFMLLSGLTSFADWIGSNEEWFPFGGAEECGDLPGWFQKRRHNADLALDAIG WEPRTPLSSEPKSFQQVFDFVPRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKA TGNAMFKRTIKFIRSQGTHRKLDLQLLHGGTLLNDTFQNLRLSGIHDPETGGDIRAGEWFTNKKRALLSEYGVGTVDQAL LPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGTLLIHLLRWLLALGSSVVLLSATLPPSIRRKLADAVSADLPAQETQ YPRLSVFCPGKEVNQIHFEADPGRRLTLRLVGLPSDLPSIHNALVVHLAGGGMGLALLNTVQRAQDLYRLFSEGEAMEYE GHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGCRDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRA GRLWRHARSFRPVEEPVLLVAGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNITLPDEIDSLVQAVYEEQVDIP EFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQTRLGEPSVMAIPIFSADEFDP AKELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKSSLLRNCFPLVLDAEGRWTEDAMVRLDDDLGLVYQSKEAE >Mature_879_residues MDKKLSLIWAKTGMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIARAWILLVVACHDLGKACPGF QCKWENMTGIDTGRSPNTDINHAYVSQIALTEILLEKGWPDELAELVADAVGCHHGNRASSIRLNYLSGDRRAIGKGDWT QARLGLVDAVLNVFMPVQNPVKQTLSGPDFMLLSGLTSFADWIGSNEEWFPFGGAEECGDLPGWFQKRRHNADLALDAIG WEPRTPLSSEPKSFQQVFDFVPRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAHLELQRRFGHRGLYVALPTKA TGNAMFKRTIKFIRSQGTHRKLDLQLLHGGTLLNDTFQNLRLSGIHDPETGGDIRAGEWFTNKKRALLSEYGVGTVDQAL LPILPVRHNFVRLWGLANRVVVFDEIHAYDAYTGTLLIHLLRWLLALGSSVVLLSATLPPSIRRKLADAVSADLPAQETQ YPRLSVFCPGKEVNQIHFEADPGRRLTLRLVGLPSDLPSIHNALVVHLAGGGMGLALLNTVQRAQDLYRLFSEGEAMEYE GHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQSGCRDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRA GRLWRHARSFRPVEEPVLLVAGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNITLPDEIDSLVQAVYEEQVDIP EFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQTRLGEPSVMAIPIFSADEFDP AKELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKSSLLRNCFPLVLDAEGRWTEDAMVRLDDDLGLVYQSKEAE
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=929, Percent_Identity=28.0947255113025, Blast_Score=235, Evalue=9e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 98058; Mature: 98058
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKLSLIWAKTGMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIA CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHH RAWILLVVACHDLGKACPGFQCKWENMTGIDTGRSPNTDINHAYVSQIALTEILLEKGWP HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH DELAELVADAVGCHHGNRASSIRLNYLSGDRRAIGKGDWTQARLGLVDAVLNVFMPVQNP HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH VKQTLSGPDFMLLSGLTSFADWIGSNEEWFPFGGAEECGDLPGWFQKRRHNADLALDAIG HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHCCCCCEEEEECC WEPRTPLSSEPKSFQQVFDFVPRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAH CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHH LELQRRFGHRGLYVALPTKATGNAMFKRTIKFIRSQGTHRKLDLQLLHGGTLLNDTFQNL HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCEEHHHHHHHC RLSGIHDPETGGDIRAGEWFTNKKRALLSEYGVGTVDQALLPILPVRHNFVRLWGLANRV EECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE VVFDEIHAYDAYTGTLLIHLLRWLLALGSSVVLLSATLPPSIRRKLADAVSADLPAQETQ EEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCC YPRLSVFCPGKEVNQIHFEADPGRRLTLRLVGLPSDLPSIHNALVVHLAGGGMGLALLNT CCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHCEEEEEEECCCHHHHHHHH VQRAQDLYRLFSEGEAMEYEGHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQS HHHHHHHHHHHHCCCCEECCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC GCRDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRAGRLWRHARSFRPVEEPVLLV CCCCCCEEEEEEHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNITLPDEIDSLVQAVYEEQVDIP EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCH EFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQT HHHHHHCCEEEEECCCHHHHHHHCCEEEEECCCCCCHHHEECCCCCCCCCCHHHHHHHHH RLGEPSVMAIPIFSADEFDPAKELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKS CCCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHEECCCCHHHHHHHHHHCCCCCCHHHH SLLRNCFPLVLDAEGRWTEDAMVRLDDDLGLVYQSKEAE HHHHHCCCEEECCCCCCCCCHHEEECCCCCEEECCCCCC >Mature Secondary Structure MDKKLSLIWAKTGMNGDGTWHPLIFHMLDVAACADAILAREPDSTRIRIAAILGLEWEIA CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHH RAWILLVVACHDLGKACPGFQCKWENMTGIDTGRSPNTDINHAYVSQIALTEILLEKGWP HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH DELAELVADAVGCHHGNRASSIRLNYLSGDRRAIGKGDWTQARLGLVDAVLNVFMPVQNP HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHH VKQTLSGPDFMLLSGLTSFADWIGSNEEWFPFGGAEECGDLPGWFQKRRHNADLALDAIG HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHCCCCCEEEEECC WEPRTPLSSEPKSFQQVFDFVPRPLQQAVADVLVGLSEPAIILVEAPMGEGKTEAAFFAH CCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHH LELQRRFGHRGLYVALPTKATGNAMFKRTIKFIRSQGTHRKLDLQLLHGGTLLNDTFQNL HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCEEHHHHHHHC RLSGIHDPETGGDIRAGEWFTNKKRALLSEYGVGTVDQALLPILPVRHNFVRLWGLANRV EECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE VVFDEIHAYDAYTGTLLIHLLRWLLALGSSVVLLSATLPPSIRRKLADAVSADLPAQETQ EEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCC YPRLSVFCPGKEVNQIHFEADPGRRLTLRLVGLPSDLPSIHNALVVHLAGGGMGLALLNT CCEEEEECCCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHCEEEEEEECCCHHHHHHHH VQRAQDLYRLFSEGEAMEYEGHRVGKRLSDGTEVFLFHARFPVDRRQKREDQVLKAFGQS HHHHHHHHHHHHCCCCEECCCHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCC GCRDERKILIATQVAEQSLDLDFDLIATDLAPIDLVLQRAGRLWRHARSFRPVEEPVLLV CCCCCCEEEEEEHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AGLAGDEPPSFEKPLWWGSVYREDLLLSTWCLLHTKQNITLPDEIDSLVQAVYEEQVDIP EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCH EFLAERMNCAIFAEGKAISERQQANMAIIGFPDDASWKEVKFEKADEDEPGLHRSLVAQT HHHHHHCCEEEEECCCHHHHHHHCCEEEEECCCCCCHHHEECCCCCCCCCCHHHHHHHHH RLGEPSVMAIPIFSADEFDPAKELTFDLSKDFFLRAVNLSRKGVVKKLQKRGVPEGWKKS CCCCCCEEEEEEECCCCCCCHHHHHHHCCCCHHHEECCCCHHHHHHHHHHCCCCCCHHHH SLLRNCFPLVLDAEGRWTEDAMVRLDDDLGLVYQSKEAE HHHHHCCCEEECCCCCCCCCHHEEECCCCCEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]