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The map label for this gene is ygcJ [H]

Identifier: 118580755

GI number: 118580755

Start: 2528761

End: 2529885

Strand: Reverse

Name: ygcJ [H]

Synonym: Ppro_2340

Alternate gene names: 118580755

Gene position: 2529885-2528761 (Counterclockwise)

Preceding gene: 118580756

Following gene: 118580754

Centisome position: 63.12

GC content: 49.16

Gene sequence:

>1125_bases
ATGAAAACAATTGTCGAGATACATGTCCTGCAGAACTTTGCCCCGTCAAACCTGAACAGAGATGATACCGGGGCTCCCAA
AGACGCTCTCTTTGGGGGAACCCGCCGTGCACGTGTTTCCAGCCAATGTCTCAAGCGCTCAGTCCGGGAGTATTTCAAGG
ATCAAAACAAAGGTTGGGTAGCTGACAGGACGAAACGGGTGGTCTATGCCCTCAAAGAGCGCATATCTCCTGTATTGGAG
TCTCAGAAGGACTTTTCAGAAGACAATTTGCTCAAAGCAATCGAAGTTGCTGTCTCAAACCTTGGAAGCAATAAAAAGGT
TAAGGTTGATAAAGAGAAAAAATCAGATGTGTTGCTTTTCTTGAGTCCCAAAGAAATTGATGCCCTTGCACAGGTTGTTG
CAGAATCATATGCAGATCTTCTTAAAACAAAACTTTCTGATCAGGTAGTCAGAAATCTGAACGATGCCATTGATGGTGAA
AACAAATCGCGCTTGAGCGTGGATGTTGCCTTGTTTGGGCGTATGTTGGCCGTAATGCCAGAGAAGAACCAGAATGCCGC
TTGCCAGGTTGCCCATGCCATTTCAACCCATGCTGTCGAGCGCGAATTTGATTTCTATACCGCTGTGGACGATCTTAAAC
CCGAGGATACGGCCGGGGCCGATATGATGGGTACGGTGGAATTTAATTCAGCCTGTTTTTACCGGTATGCAGTGGTTGAC
TGGGAAAAACTCCTGGTAAATTTGCAGGCTGACGAAGCATTGGCGACCAAGGGTCTCAGGGCTTTTCTGGAAGGTTTTGT
CGTTGCTGAGCCAACCGGCAAGCAGAACACCTTTGCCGCCCATAACCCACCTGAGTTTGTTGCGGTCACCGTGCGTCGCA
ATGCGGCTCCCCGCAACCTGGCCAATGCATTTGAAACGGCAGTCCGCGTGAGAAAGGATGAGTCTCTGACCAGAAAGTCA
GCTGAAGGGCTGGCCAATAAGGCCAAGGCGCTGCAGTCTGCCTTTGGTGGTGATGAAAAGACATTTGTTCTTAATCTCGC
TGAGGCCACTATCGATGGATTCGGTATCGTGATGCCAACGCTCAATGATCTTCTCGACAAGGCCCTGTTGGCTGTGCAGG
AGTGA

Upstream 100 bases:

>100_bases
ATGAGCAAAAACGAACTCAGAATGGGTGGGGTCGTGATTATTACAGGAACCTGAACAACGAAACGGACACAGTACATCAT
AACGATAAGGAGATTAGTGA

Downstream 100 bases:

>100_bases
CCTATGCCCACATTATTACTTCGTCTGGTGGGCCCCATGCAGTCGTGGGGTACCACCAGCCGTTTTGACCAACGTGATAC
CGGGAAGGAACCGAGCAAAT

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKTIVEIHVLQNFAPSNLNRDDTGAPKDALFGGTRRARVSSQCLKRSVREYFKDQNKGWVADRTKRVVYALKERISPVLE
SQKDFSEDNLLKAIEVAVSNLGSNKKVKVDKEKKSDVLLFLSPKEIDALAQVVAESYADLLKTKLSDQVVRNLNDAIDGE
NKSRLSVDVALFGRMLAVMPEKNQNAACQVAHAISTHAVEREFDFYTAVDDLKPEDTAGADMMGTVEFNSACFYRYAVVD
WEKLLVNLQADEALATKGLRAFLEGFVVAEPTGKQNTFAAHNPPEFVAVTVRRNAAPRNLANAFETAVRVRKDESLTRKS
AEGLANKAKALQSAFGGDEKTFVLNLAEATIDGFGIVMPTLNDLLDKALLAVQE

Sequences:

>Translated_374_residues
MKTIVEIHVLQNFAPSNLNRDDTGAPKDALFGGTRRARVSSQCLKRSVREYFKDQNKGWVADRTKRVVYALKERISPVLE
SQKDFSEDNLLKAIEVAVSNLGSNKKVKVDKEKKSDVLLFLSPKEIDALAQVVAESYADLLKTKLSDQVVRNLNDAIDGE
NKSRLSVDVALFGRMLAVMPEKNQNAACQVAHAISTHAVEREFDFYTAVDDLKPEDTAGADMMGTVEFNSACFYRYAVVD
WEKLLVNLQADEALATKGLRAFLEGFVVAEPTGKQNTFAAHNPPEFVAVTVRRNAAPRNLANAFETAVRVRKDESLTRKS
AEGLANKAKALQSAFGGDEKTFVLNLAEATIDGFGIVMPTLNDLLDKALLAVQE
>Mature_374_residues
MKTIVEIHVLQNFAPSNLNRDDTGAPKDALFGGTRRARVSSQCLKRSVREYFKDQNKGWVADRTKRVVYALKERISPVLE
SQKDFSEDNLLKAIEVAVSNLGSNKKVKVDKEKKSDVLLFLSPKEIDALAQVVAESYADLLKTKLSDQVVRNLNDAIDGE
NKSRLSVDVALFGRMLAVMPEKNQNAACQVAHAISTHAVEREFDFYTAVDDLKPEDTAGADMMGTVEFNSACFYRYAVVD
WEKLLVNLQADEALATKGLRAFLEGFVVAEPTGKQNTFAAHNPPEFVAVTVRRNAAPRNLANAFETAVRVRKDESLTRKS
AEGLANKAKALQSAFGGDEKTFVLNLAEATIDGFGIVMPTLNDLLDKALLAVQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=316, Percent_Identity=35.4430379746835, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 41228; Mature: 41228

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIVEIHVLQNFAPSNLNRDDTGAPKDALFGGTRRARVSSQCLKRSVREYFKDQNKGWV
CCCEEEEHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
ADRTKRVVYALKERISPVLESQKDFSEDNLLKAIEVAVSNLGSNKKVKVDKEKKSDVLLF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEE
LSPKEIDALAQVVAESYADLLKTKLSDQVVRNLNDAIDGENKSRLSVDVALFGRMLAVMP
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
EKNQNAACQVAHAISTHAVEREFDFYTAVDDLKPEDTAGADMMGTVEFNSACFYRYAVVD
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEHHHH
WEKLLVNLQADEALATKGLRAFLEGFVVAEPTGKQNTFAAHNPPEFVAVTVRRNAAPRNL
HHHHHEECCCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
ANAFETAVRVRKDESLTRKSAEGLANKAKALQSAFGGDEKTFVLNLAEATIDGFGIVMPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCEEHHHH
LNDLLDKALLAVQE
HHHHHHHHHHHHCC
>Mature Secondary Structure
MKTIVEIHVLQNFAPSNLNRDDTGAPKDALFGGTRRARVSSQCLKRSVREYFKDQNKGWV
CCCEEEEHHHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH
ADRTKRVVYALKERISPVLESQKDFSEDNLLKAIEVAVSNLGSNKKVKVDKEKKSDVLLF
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEE
LSPKEIDALAQVVAESYADLLKTKLSDQVVRNLNDAIDGENKSRLSVDVALFGRMLAVMP
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHCC
EKNQNAACQVAHAISTHAVEREFDFYTAVDDLKPEDTAGADMMGTVEFNSACFYRYAVVD
CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEHHHH
WEKLLVNLQADEALATKGLRAFLEGFVVAEPTGKQNTFAAHNPPEFVAVTVRRNAAPRNL
HHHHHEECCCHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCHHH
ANAFETAVRVRKDESLTRKSAEGLANKAKALQSAFGGDEKTFVLNLAEATIDGFGIVMPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCEEHHHH
LNDLLDKALLAVQE
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]