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The map label for this gene is ihfA [H]

Identifier: 118580717

GI number: 118580717

Start: 2484168

End: 2484461

Strand: Reverse

Name: ihfA [H]

Synonym: Ppro_2302

Alternate gene names: 118580717

Gene position: 2484461-2484168 (Counterclockwise)

Preceding gene: 118580718

Following gene: 118580716

Centisome position: 61.99

GC content: 48.3

Gene sequence:

>294_bases
ATGACCAAAGCCGACATCGTCGAAAGAATTCACCAAAAAATAGGTTTCTCGAAAAAAGAGTCTGCCGAAATGGTGGAAAC
GGTTTTCAGCATCATCAAAAGCACGCTGGAAACGGGCGAAAAAATCAAGATTGCCGGTTTCGGTAATTTTGTTGTCAAGC
AGAAGGCTGACCGCAGGGGACGCAACCCGCAGACTGGTGAAACCATAACCATCGCAGCACGCCGCATTTTGACGTTCAAG
CCAAGCCAAGTGCTGAAGAATGCCATCAACGTAGAAAACGCCGAGAGTGCCTAG

Upstream 100 bases:

>100_bases
AAACGTATCAATAAGATAAAAACTGTTGCGAAATACATTTGCTCATGCTATATAGGTTTTCCTTTTAGCAGCTTACGAAA
GAAACCAGATTGAGGTTGTC

Downstream 100 bases:

>100_bases
CGGACGGCGGCATGAATGAAGACTTCTCCGACAAGCTGTATTACAAGATCGGTGAAGTGGCCCAACTAGTGGGAGTCAAG
GCCTCGGTGCTCCGTTTCTG

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRGRNPQTGETITIAARRILTFK
PSQVLKNAINVENAESA

Sequences:

>Translated_97_residues
MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRGRNPQTGETITIAARRILTFK
PSQVLKNAINVENAESA
>Mature_96_residues
TKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRGRNPQTGETITIAARRILTFKP
SQVLKNAINVENAESA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=50, Blast_Score=100, Evalue=2e-23,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=35.5555555555556, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=35.9550561797753, Blast_Score=69, Evalue=7e-14,
Organism=Escherichia coli, GI1787141, Length=92, Percent_Identity=34.7826086956522, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10762; Mature: 10630

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCHHHCC
RNPQTGETITIAARRILTFKPSQVLKNAINVENAESA
CCCCCCCEEHHHHHHHHCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKADIVERIHQKIGFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRRG
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCHHHCC
RNPQTGETITIAARRILTFKPSQVLKNAINVENAESA
CCCCCCCEEHHHHHHHHCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA