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The map label for this gene is intB [H]

Identifier: 118580715

GI number: 118580715

Start: 2482330

End: 2483541

Strand: Reverse

Name: intB [H]

Synonym: Ppro_2300

Alternate gene names: 118580715

Gene position: 2483541-2482330 (Counterclockwise)

Preceding gene: 118580716

Following gene: 118580713

Centisome position: 61.96

GC content: 48.18

Gene sequence:

>1212_bases
ATGCCTAAAAGGATTGCGCCGCTTTCGGATCTGCAGGTTCGTAATGCGAAACCGAAAGAAAAGCAGGTCACACTTTTTGA
CGGTGGTGGACTGTATCTTCTGATTACACCTACCGGCGGAAAACTCTGGAGATTAAAATATAGTCTGTTCGGAAAGGAAA
AGTTGCTTGCGCTTGGGACCTACCCAGAGATTTCCCTTGCTGATGCTCGTCAGAGGCGTGAGGACGCTCGTAAACAAGTT
GCGAATGGTATTGACCCTGGTGAAGTGAAAAAAGCCCAAAAAGTGTCATCTGGCGAAGGCGATGAAAATAGCTTTGAAGT
TATTGCCCGAGAATGGCACGGCAAGTTTTTATTGAACAAGTCCGAGAGTTACCGCGACAAGATGCTGTCGAATTTCGAGC
GTGATGTCTTTCCGTGGATAGGTAGGGTTGCTGTAAAGAATTTGAAAGCCCCAGAACTGCTTTCAGCATTACGTCGTATT
GAAGGCCGTGGCGCACTGGAAACGGCACACAGGACCCGCTCTGCTTGTAGTCAGGTGCTTCGGTACGCTGTCGCCACCGG
AAGGGCTGAGAGGGATTGTGCTTCAGATTTGATCGGCGCTTTGCCACCATACAAAAAAGGGCATCGTGCAGCACTTACCG
ATCCGAAAGAAGTTGCACCACTTCTGAGGGCTATTGATGATTATCAAGGGACCTTTCCGGTAAAATGCGCTTTGAAGCTT
GCTCCGCTTCTTTTCGTCCGTCCTGGCGAACTCCGTAAAGCTGAGTGGTCAGAGGTTGATTTTAAGGCCACTGAGTGGAG
GATTCCCGGTGATAAGATGAAGATGAAAAACGATCATATTGTGCCATTGGCTTCTCAGGCTGTTGAAATACTGAAAGAGC
TTTATCCGTTAACGGGTCATTCCAAATTTCTTTTTCCTTCCCCTCGCTCACCGCTTCGCCCCATGAGTGATAATGCAATT
CTTTCAGCACTAAGGCGTATGGGCTTTGAGAAGGATGAGATGAGCGGCCACGGTTTTAGGGCTATGGCCCGGACAATACT
TGATGAAGTACTGCATGTAAGGCCTGACTTTATCGAGCACCAGTTAGCCCACGCGGTTAGAGATCCCAATGGCAGAGCAT
ATAATAGAACGGCACATCTAGCGGAACGAAAGAAGATGATGCAGGCATGGGCAGATTATCTGGATGATTTAAAGACCAGG
AATGGCATCTAA

Upstream 100 bases:

>100_bases
AATTCACTTAGATATACTCAAATCCAATTACTTTCGGTATATGTGGGTTGGGTATATATACCGATACCGAAACCCGTATA
CCGAAAAGGAGGAAAATCCC

Downstream 100 bases:

>100_bases
TTACATAAAGGCGAACTTCTTAAATTTTATTGTGTTGGAAGGGTAGGCTGAAAAAGAAAATTGCTGTTGATTTTTCTTCC
GAAATGATCTAATAACATAT

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MPKRIAPLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGTYPEISLADARQRREDARKQV
ANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNKSESYRDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRI
EGRGALETAHRTRSACSQVLRYAVATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKL
APLLFVRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGHSKFLFPSPRSPLRPMSDNAI
LSALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEHQLAHAVRDPNGRAYNRTAHLAERKKMMQAWADYLDDLKTR
NGI

Sequences:

>Translated_403_residues
MPKRIAPLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGTYPEISLADARQRREDARKQV
ANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNKSESYRDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRI
EGRGALETAHRTRSACSQVLRYAVATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKL
APLLFVRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGHSKFLFPSPRSPLRPMSDNAI
LSALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEHQLAHAVRDPNGRAYNRTAHLAERKKMMQAWADYLDDLKTR
NGI
>Mature_402_residues
PKRIAPLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGTYPEISLADARQRREDARKQVA
NGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNKSESYRDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRIE
GRGALETAHRTRSACSQVLRYAVATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKLA
PLLFVRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGHSKFLFPSPRSPLRPMSDNAIL
SALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEHQLAHAVRDPNGRAYNRTAHLAERKKMMQAWADYLDDLKTRN
GI

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=396, Percent_Identity=35.6060606060606, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1788690, Length=392, Percent_Identity=37.7551020408163, Blast_Score=248, Evalue=6e-67,
Organism=Escherichia coli, GI145693166, Length=398, Percent_Identity=34.6733668341709, Blast_Score=232, Evalue=3e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45486; Mature: 45355

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRIAPLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGT
CCCCCCCCCCCHHCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEHHHHCCCCEEEECC
YPEISLADARQRREDARKQVANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNK
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECC
SESYRDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRIEGRGALETAHRTRSACSQVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RYAVATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKL
HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
APLLFVRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGH
HCCCEECCCCCCCCCCCCCCCCEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
SKFLFPSPRSPLRPMSDNAILSALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEH
CEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
QLAHAVRDPNGRAYNRTAHLAERKKMMQAWADYLDDLKTRNGI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PKRIAPLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGT
CCCCCCCCCCHHCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEHHHHCCCCEEEECC
YPEISLADARQRREDARKQVANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNK
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECC
SESYRDKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRIEGRGALETAHRTRSACSQVL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RYAVATGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKL
HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
APLLFVRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGH
HCCCEECCCCCCCCCCCCCCCCEEEEECCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
SKFLFPSPRSPLRPMSDNAILSALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEH
CEEECCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
QLAHAVRDPNGRAYNRTAHLAERKKMMQAWADYLDDLKTRNGI
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]