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The map label for this gene is rfaQ [H]

Identifier: 118580516

GI number: 118580516

Start: 2258393

End: 2259478

Strand: Reverse

Name: rfaQ [H]

Synonym: Ppro_2100

Alternate gene names: 118580516

Gene position: 2259478-2258393 (Counterclockwise)

Preceding gene: 118580517

Following gene: 118580514

Centisome position: 56.37

GC content: 65.01

Gene sequence:

>1086_bases
GTGGGGCGCGCGGTTGCCTGCGTTGCCTCACGTATGCCGATTTCAACATCACAGCCGGGATCGATCGTCTCCATCCTCCT
CATCCGCCCCGGCGGCATCGGCGATGCCGTGCTGCTGATGCCCGCCATAATCGCGCTCAAGCAGAAATTCCCCCAAGCAA
GTATCACCGTCCTGGCCGAACGGCGCAACGCCGCCACCTTTGCCCTCTGCCCGGAGGTTGACCGTGTCCTGCACTACGAT
ATGCCCTCGGAACTACTCTCCGCGATTCGCGGACGCTATGACCTGGTGATCGACAGTGAACAGTGGCATCGCCTCTCGGC
GGTGGTGGCCCGTCTCTGCCGGCCGAAGCTGCTGATCGGCTTCGCTACCAACGAGCGGCGGCGTCTCTTCAGCCATGGCG
TCTCCTACTCCCACGACGACTACGAGGTGACCAGTTTTCTCAGGTTGCTGGAACCGCTGGGGATCACTGGGGGAAAGGTC
GAGGCACCATTTCTGACCGTACCGGCAGCGGCAATGGAGGAGGCGGATGCCCTGCTGGCCCCCCTCGGCGGACAGCCATT
CGTGGTCATCTTTCCCGGTGCCAGCATTCCCGAACGGCGCTGGGGGGCTGAGCGGTACAGTCGGGTGGCAGAAGCGCTGA
ACGACGAGGGCTATCCTGTCGTGGTGGTGGGCGGAAATGGCGACAGGGAGCAGGGTGAGCTGATCGTTGCCGCTGGAAGG
GGGCTGAACCTGGCCGGCCGGACGTCCCTGGCCGAAACCGCCGCGGTTCTCGCCAGGAGCAGTCTGCTGGTGAGCGGCGA
TTCCGGGGTGCTGCATCTGGCCGTGGGGTTGGGGGTGCGGACCGTCTCCCTGTTCGGGCCGGGGAGGGCGCTGAAATGGG
CGCCACGGGGAGGGGGGCACGTGGTACTCAACCGGAACCTGGCCTGTTCACCCTGCACCACCTTCGGCACCACGCCGCCA
TGCCCCAGCGGTGCGCGCTGCATGCGGGAGATCACGGTTGAGCAGGTGCTGCACCAGATAAACGCCTTCCTCACGCCCGC
TCGCCATGCTCGCTCAAGACGCCAAGGCGCAAAGGAAAACAAATAA

Upstream 100 bases:

>100_bases
AGGTGGTGGAGCGGTTGCTGAATGGTGGAGCCGAACCGACACTCAATGGAAGTACCCGCGGGTGAACCGGGTTCGGCTGC
TCAAGGGGATTGATGCTGTC

Downstream 100 bases:

>100_bases
CAAATCGTAACCAACGGTAAAACAAGACATTATGGTTTCTCTCAAGTAGTTCCGTTTTCCGGTTCTCTTTGCGTCTTTGC
GGGAGAACGATTTTATGTCA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MGRAVACVASRMPISTSQPGSIVSILLIRPGGIGDAVLLMPAIIALKQKFPQASITVLAERRNAATFALCPEVDRVLHYD
MPSELLSAIRGRYDLVIDSEQWHRLSAVVARLCRPKLLIGFATNERRRLFSHGVSYSHDDYEVTSFLRLLEPLGITGGKV
EAPFLTVPAAAMEEADALLAPLGGQPFVVIFPGASIPERRWGAERYSRVAEALNDEGYPVVVVGGNGDREQGELIVAAGR
GLNLAGRTSLAETAAVLARSSLLVSGDSGVLHLAVGLGVRTVSLFGPGRALKWAPRGGGHVVLNRNLACSPCTTFGTTPP
CPSGARCMREITVEQVLHQINAFLTPARHARSRRQGAKENK

Sequences:

>Translated_361_residues
MGRAVACVASRMPISTSQPGSIVSILLIRPGGIGDAVLLMPAIIALKQKFPQASITVLAERRNAATFALCPEVDRVLHYD
MPSELLSAIRGRYDLVIDSEQWHRLSAVVARLCRPKLLIGFATNERRRLFSHGVSYSHDDYEVTSFLRLLEPLGITGGKV
EAPFLTVPAAAMEEADALLAPLGGQPFVVIFPGASIPERRWGAERYSRVAEALNDEGYPVVVVGGNGDREQGELIVAAGR
GLNLAGRTSLAETAAVLARSSLLVSGDSGVLHLAVGLGVRTVSLFGPGRALKWAPRGGGHVVLNRNLACSPCTTFGTTPP
CPSGARCMREITVEQVLHQINAFLTPARHARSRRQGAKENK
>Mature_360_residues
GRAVACVASRMPISTSQPGSIVSILLIRPGGIGDAVLLMPAIIALKQKFPQASITVLAERRNAATFALCPEVDRVLHYDM
PSELLSAIRGRYDLVIDSEQWHRLSAVVARLCRPKLLIGFATNERRRLFSHGVSYSHDDYEVTSFLRLLEPLGITGGKVE
APFLTVPAAAMEEADALLAPLGGQPFVVIFPGASIPERRWGAERYSRVAEALNDEGYPVVVVGGNGDREQGELIVAAGRG
LNLAGRTSLAETAAVLARSSLLVSGDSGVLHLAVGLGVRTVSLFGPGRALKWAPRGGGHVVLNRNLACSPCTTFGTTPPC
PSGARCMREITVEQVLHQINAFLTPARHARSRRQGAKENK

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=287, Percent_Identity=27.1777003484321, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790050, Length=110, Percent_Identity=37.2727272727273, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38607; Mature: 38476

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRAVACVASRMPISTSQPGSIVSILLIRPGGIGDAVLLMPAIIALKQKFPQASITVLAE
CCCEEEEHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
RRNAATFALCPEVDRVLHYDMPSELLSAIRGRYDLVIDSEQWHRLSAVVARLCRPKLLIG
CCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEE
FATNERRRLFSHGVSYSHDDYEVTSFLRLLEPLGITGGKVEAPFLTVPAAAMEEADALLA
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHC
PLGGQPFVVIFPGASIPERRWGAERYSRVAEALNDEGYPVVVVGGNGDREQGELIVAAGR
CCCCCCEEEEECCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECC
GLNLAGRTSLAETAAVLARSSLLVSGDSGVLHLAVGLGVRTVSLFGPGRALKWAPRGGGH
CCCCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCE
VVLNRNLACSPCTTFGTTPPCPSGARCMREITVEQVLHQINAFLTPARHARSRRQGAKEN
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
K
C
>Mature Secondary Structure 
GRAVACVASRMPISTSQPGSIVSILLIRPGGIGDAVLLMPAIIALKQKFPQASITVLAE
CCEEEEHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
RRNAATFALCPEVDRVLHYDMPSELLSAIRGRYDLVIDSEQWHRLSAVVARLCRPKLLIG
CCCCEEEEECCHHHHHHCCCCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCEEEEE
FATNERRRLFSHGVSYSHDDYEVTSFLRLLEPLGITGGKVEAPFLTVPAAAMEEADALLA
ECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHHC
PLGGQPFVVIFPGASIPERRWGAERYSRVAEALNDEGYPVVVVGGNGDREQGELIVAAGR
CCCCCCEEEEECCCCCCHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECC
GLNLAGRTSLAETAAVLARSSLLVSGDSGVLHLAVGLGVRTVSLFGPGRALKWAPRGGGH
CCCCCCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCEEEEEEECCCCEEEECCCCCCE
VVLNRNLACSPCTTFGTTPPCPSGARCMREITVEQVLHQINAFLTPARHARSRRQGAKEN
EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA