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The map label for this gene is ybjD [C]

Identifier: 118580293

GI number: 118580293

Start: 2015460

End: 2017571

Strand: Reverse

Name: ybjD [C]

Synonym: Ppro_1874

Alternate gene names: 118580293

Gene position: 2017571-2015460 (Counterclockwise)

Preceding gene: 118580294

Following gene: 118580292

Centisome position: 50.34

GC content: 38.16

Gene sequence:

>2112_bases
ATGCATATATCTTGTTTATCAATTCGGAACTTCAGGAACTTCAAAAGTGCCCAACTGCATTTTAGAAAAGGTATCAATAC
TATCATTGGAGAAAATGGCTCTGGCAAAACAAATCTTTTTTTCTCTTTACGGATTTTGATTGATAACACCCTGCCGAGAT
ATTTCAAATTTTATCAAACTGATTTTAATAGGGTGTTGGATAGTTGGGCCGGGCATTGGATTATTATTTCAATAACATTT
GACGGATTAGACACAAGCGAAGAAGCCCAGGCATTAGCGATACAGTCAAGTGGACATATGGAAACAGCCACACAAGGAAG
CTATTCGGTATATTTCAGGCCGAAATACCAATTTAGAAAAGAACTTTACGAATACTCTCAGGTTGAAGGCAAGGATTCAG
CAGGATTGAAACTTTTGTTGGATAAGCTGGCAATTGAAGATTATGAAACCGTCTATTTATGCAGGAGTACGGCGGATTTC
AGCATAGATGATATTTATAAAAAGTACGTTGGTGATTTTGACAAGATTGAATTCCCAGACCCTGATGATAAAGAAGAATT
GATATTCGGGACATGGTTACCCAAAGAAATCAATATCCACAACGAATTGTCCTGCACATTCATTAAAGCACTTAGAGACG
TTGAAAGCGATTTACGTTCCTATTCAAGTAACCCACTAATAAGCCTTTTAAGAGGAAAAGAAAAGACCGTTGAAATTACT
AAACAGCACGAGATTATAGAGAGTATTGACCAGCTGAACGAACAAATCAGTTCGCTCGATGAAGTGATGGAAGTAAAGAA
CGGTATTGATAAGAGCATTAAGGAAACGGTTGGTACTACCTATGCACCAAATATCGACATAAAGTCCGAACTTCCAAATG
AAATGGAGAAACTGTTCCAATCGTTAAAACTATGGATTGGCGACCCAGACGAAGATGGTCACAAAGGGAGAATATCGGAA
TTGAGTTTGGGAGGTGCTAACATCATTTATCTGTCCTTAAAGTTGTTGGAATATGAAAAAGTTAAGACCGACAGGATTGC
AAATTTCCTTTTGGTCGAAGAACCGGAAGCACACGTTCACACTCATATTCAAAAAACCCTTTTTAACAATCTGAAAGAGA
ACAAAACCCAAGTCATTGTATCAACTCATTCCACTCATATCTCGTCAGTAAGCAATATAAGCCAAGTCAATATATTGAGT
CGTGGTGACAAAGAGGCTCAAATATTTTATCCGTCAAAAGGTCTGGACAAAGACGAAATTATAAGAATTGAGCGATACCT
TGATGCAGTTAGAAGTAATTTACTATTTGCGAAAGGTGTTGTTTTGGTTGAAGGTGATGCGGAACAGATATTGATTCCAG
AGATGTTCAAAAAAGTCTTTGGGCTTTCTTTGGATGAAATCGGTGTAAGCTTAATAAATATAGGTAGTACCGGCTTCGAA
AACGTCGCGAGGATTTTTCATCCTGACAGGGTAAGGAAAAACTGTTCCATTCTCACGGATGATGATACGTCCATCGTGAC
ACTTCCTGCAGACCCTAAAACCGACACCGAGTACCAGGCTCATTGTAGAGCATCAGAGAAAAGTGGAAAAGAAAGGAAAC
TTCGACTTACAGATTTTTGCAAAGGAAACACATATATAAAGCCGATTTATGCAAAGTATACGTTTGAAGTTGATTTCCTT
ATGAACTCTAACAGCTATGAATTTGCCAATTGCTTGGATTCGATTTATAAGCAAGGCGCTGCGATTGATAAGGCAAAAGA
AAAACTTGAAAACAAGTCAGTAGAGATTGCTGGTGTCGAAGTTTTAAGGATTGCGGGCAAGCATGGTAAAGGGTGGTTGG
CTTTATTGGTAGCGGAACAACTTGTATATAACACTTTCATTCCAAAATATATTCTTGAAGCCATAGCATTTGCTGCTGCG
CATATTAATATATCCTCTAAAGCAAAGGCGGTACTGCATCGCATTAAACATATTCAGGAACACGATGGCAATTCGCTTCA
GGAAAAGGCCAAAGACTTTGACGTTAAGGATAAATCACATGAAGAGATTGTTTCCGCTTTCATTGCTGATTTCAAAAACG
ACCAACTTACAACCTTTTTAGCATTCCTATGA

Upstream 100 bases:

>100_bases
AGTGCAGCATCGGAAGTGGATAAGATGTTCCACTGAGACTTTCTGACACAGAAAGAGAAGCAACTTCATCAGTCTGAACT
TCTGAAAAGGCAAATAAATC

Downstream 100 bases:

>100_bases
TTCTTGCTAAATTAAACCACGAGCAGAAGTTGGCCGTGAAGCAGGAAGGGCATGTATTATTGACGGCTTGTCCTGGAAGT
GGGAAAACACGAGTATTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRILIDNTLPRYFKFYQTDFNRVLDSWAGHWIIISITF
DGLDTSEEAQALAIQSSGHMETATQGSYSVYFRPKYQFRKELYEYSQVEGKDSAGLKLLLDKLAIEDYETVYLCRSTADF
SIDDIYKKYVGDFDKIEFPDPDDKEELIFGTWLPKEINIHNELSCTFIKALRDVESDLRSYSSNPLISLLRGKEKTVEIT
KQHEIIESIDQLNEQISSLDEVMEVKNGIDKSIKETVGTTYAPNIDIKSELPNEMEKLFQSLKLWIGDPDEDGHKGRISE
LSLGGANIIYLSLKLLEYEKVKTDRIANFLLVEEPEAHVHTHIQKTLFNNLKENKTQVIVSTHSTHISSVSNISQVNILS
RGDKEAQIFYPSKGLDKDEIIRIERYLDAVRSNLLFAKGVVLVEGDAEQILIPEMFKKVFGLSLDEIGVSLINIGSTGFE
NVARIFHPDRVRKNCSILTDDDTSIVTLPADPKTDTEYQAHCRASEKSGKERKLRLTDFCKGNTYIKPIYAKYTFEVDFL
MNSNSYEFANCLDSIYKQGAAIDKAKEKLENKSVEIAGVEVLRIAGKHGKGWLALLVAEQLVYNTFIPKYILEAIAFAAA
HINISSKAKAVLHRIKHIQEHDGNSLQEKAKDFDVKDKSHEEIVSAFIADFKNDQLTTFLAFL

Sequences:

>Translated_703_residues
MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRILIDNTLPRYFKFYQTDFNRVLDSWAGHWIIISITF
DGLDTSEEAQALAIQSSGHMETATQGSYSVYFRPKYQFRKELYEYSQVEGKDSAGLKLLLDKLAIEDYETVYLCRSTADF
SIDDIYKKYVGDFDKIEFPDPDDKEELIFGTWLPKEINIHNELSCTFIKALRDVESDLRSYSSNPLISLLRGKEKTVEIT
KQHEIIESIDQLNEQISSLDEVMEVKNGIDKSIKETVGTTYAPNIDIKSELPNEMEKLFQSLKLWIGDPDEDGHKGRISE
LSLGGANIIYLSLKLLEYEKVKTDRIANFLLVEEPEAHVHTHIQKTLFNNLKENKTQVIVSTHSTHISSVSNISQVNILS
RGDKEAQIFYPSKGLDKDEIIRIERYLDAVRSNLLFAKGVVLVEGDAEQILIPEMFKKVFGLSLDEIGVSLINIGSTGFE
NVARIFHPDRVRKNCSILTDDDTSIVTLPADPKTDTEYQAHCRASEKSGKERKLRLTDFCKGNTYIKPIYAKYTFEVDFL
MNSNSYEFANCLDSIYKQGAAIDKAKEKLENKSVEIAGVEVLRIAGKHGKGWLALLVAEQLVYNTFIPKYILEAIAFAAA
HINISSKAKAVLHRIKHIQEHDGNSLQEKAKDFDVKDKSHEEIVSAFIADFKNDQLTTFLAFL
>Mature_703_residues
MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRILIDNTLPRYFKFYQTDFNRVLDSWAGHWIIISITF
DGLDTSEEAQALAIQSSGHMETATQGSYSVYFRPKYQFRKELYEYSQVEGKDSAGLKLLLDKLAIEDYETVYLCRSTADF
SIDDIYKKYVGDFDKIEFPDPDDKEELIFGTWLPKEINIHNELSCTFIKALRDVESDLRSYSSNPLISLLRGKEKTVEIT
KQHEIIESIDQLNEQISSLDEVMEVKNGIDKSIKETVGTTYAPNIDIKSELPNEMEKLFQSLKLWIGDPDEDGHKGRISE
LSLGGANIIYLSLKLLEYEKVKTDRIANFLLVEEPEAHVHTHIQKTLFNNLKENKTQVIVSTHSTHISSVSNISQVNILS
RGDKEAQIFYPSKGLDKDEIIRIERYLDAVRSNLLFAKGVVLVEGDAEQILIPEMFKKVFGLSLDEIGVSLINIGSTGFE
NVARIFHPDRVRKNCSILTDDDTSIVTLPADPKTDTEYQAHCRASEKSGKERKLRLTDFCKGNTYIKPIYAKYTFEVDFL
MNSNSYEFANCLDSIYKQGAAIDKAKEKLENKSVEIAGVEVLRIAGKHGKGWLALLVAEQLVYNTFIPKYILEAIAFAAA
HINISSKAKAVLHRIKHIQEHDGNSLQEKAKDFDVKDKSHEEIVSAFIADFKNDQLTTFLAFL

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79893; Mature: 79893

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRILIDNTLPRYFKFYQT
CEEEEEEHHHHCCCHHHHHHHHHCCHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
DFNRVLDSWAGHWIIISITFDGLDTSEEAQALAIQSSGHMETATQGSYSVYFRPKYQFRK
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCHHHHH
ELYEYSQVEGKDSAGLKLLLDKLAIEDYETVYLCRSTADFSIDDIYKKYVGDFDKIEFPD
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
PDDKEELIFGTWLPKEINIHNELSCTFIKALRDVESDLRSYSSNPLISLLRGKEKTVEIT
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHEEHH
KQHEIIESIDQLNEQISSLDEVMEVKNGIDKSIKETVGTTYAPNIDIKSELPNEMEKLFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHH
SLKLWIGDPDEDGHKGRISELSLGGANIIYLSLKLLEYEKVKTDRIANFLLVEEPEAHVH
HHHEECCCCCCCCCCCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHEEEEEECCCHHHH
THIQKTLFNNLKENKTQVIVSTHSTHISSVSNISQVNILSRGDKEAQIFYPSKGLDKDEI
HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCHHHEEEEECCCCCCEEEECCCCCCHHHH
IRIERYLDAVRSNLLFAKGVVLVEGDAEQILIPEMFKKVFGLSLDEIGVSLINIGSTGFE
HHHHHHHHHHHHCCEEECCEEEEECCCCCEEHHHHHHHHHCCCHHHHCEEEEECCCCCHH
NVARIFHPDRVRKNCSILTDDDTSIVTLPADPKTDTEYQAHCRASEKSGKERKLRLTDFC
HHHHHHCCHHHHCCCCEEECCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEHEEC
KGNTYIKPIYAKYTFEVDFLMNSNSYEFANCLDSIYKQGAAIDKAKEKLENKSVEIAGVE
CCCCEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECEE
VLRIAGKHGKGWLALLVAEQLVYNTFIPKYILEAIAFAAAHINISSKAKAVLHRIKHIQE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HDGNSLQEKAKDFDVKDKSHEEIVSAFIADFKNDQLTTFLAFL
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure
MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRILIDNTLPRYFKFYQT
CEEEEEEHHHHCCCHHHHHHHHHCCHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
DFNRVLDSWAGHWIIISITFDGLDTSEEAQALAIQSSGHMETATQGSYSVYFRPKYQFRK
HHHHHHHHCCCCEEEEEEEECCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCHHHHH
ELYEYSQVEGKDSAGLKLLLDKLAIEDYETVYLCRSTADFSIDDIYKKYVGDFDKIEFPD
HHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCC
PDDKEELIFGTWLPKEINIHNELSCTFIKALRDVESDLRSYSSNPLISLLRGKEKTVEIT
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHEEHH
KQHEIIESIDQLNEQISSLDEVMEVKNGIDKSIKETVGTTYAPNIDIKSELPNEMEKLFQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHH
SLKLWIGDPDEDGHKGRISELSLGGANIIYLSLKLLEYEKVKTDRIANFLLVEEPEAHVH
HHHEECCCCCCCCCCCCCEEEECCCCEEEEEEEEHHHHHHHHHHHHHEEEEEECCCHHHH
THIQKTLFNNLKENKTQVIVSTHSTHISSVSNISQVNILSRGDKEAQIFYPSKGLDKDEI
HHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCHHHEEEEECCCCCCEEEECCCCCCHHHH
IRIERYLDAVRSNLLFAKGVVLVEGDAEQILIPEMFKKVFGLSLDEIGVSLINIGSTGFE
HHHHHHHHHHHHCCEEECCEEEEECCCCCEEHHHHHHHHHCCCHHHHCEEEEECCCCCHH
NVARIFHPDRVRKNCSILTDDDTSIVTLPADPKTDTEYQAHCRASEKSGKERKLRLTDFC
HHHHHHCCHHHHCCCCEEECCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCCEEEEHEEC
KGNTYIKPIYAKYTFEVDFLMNSNSYEFANCLDSIYKQGAAIDKAKEKLENKSVEIAGVE
CCCCEEEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECEE
VLRIAGKHGKGWLALLVAEQLVYNTFIPKYILEAIAFAAAHINISSKAKAVLHRIKHIQE
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
HDGNSLQEKAKDFDVKDKSHEEIVSAFIADFKNDQLTTFLAFL
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA