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The map label for this gene is ywhC [H]

Identifier: 118580107

GI number: 118580107

Start: 1813290

End: 1813967

Strand: Direct

Name: ywhC [H]

Synonym: Ppro_1686

Alternate gene names: 118580107

Gene position: 1813290-1813967 (Clockwise)

Preceding gene: 118580106

Following gene: 118580108

Centisome position: 45.24

GC content: 61.5

Gene sequence:

>678_bases
ATGGACGATTTTCTGCTCAAAATCTCGGTCATGCTCGTGCCGGGGATGCTGGCCATCACCTGCCATGAGGTATCCCACGG
CTATATTGCCTGGCATTTCGGCGACCCCACGGCGCGCATGCTGGGCAGGCTGACCCTGAATCCCCTGAAGCACCTCGATC
CCATCGGCACCCTGATGATCTTCTTCATCGGCATCGGTTGGGCCAAGCCGGTTCCGGTGGTGTTCGAAAATCTGCGCAAT
CCCAAGAAGGATATGATCTGGGTCGCGGCGGCCGGGCCGATTACCAATCTTGTCTTGGCAGCGCTCTCCGCCCTCCTGCT
GCGGGGCGTGGTTGCCCTGGAAAGTCCTGACGCCCTGTCGCCGGCGACGTTCATCGTCGAGCCGCTGGTGCTGATGCTGG
CCTTTTCCGTCTACATCAACCTGCTGCTGTCGATCTTCAACATGATCCCGCTGCCCCCGCTGGATGGCGGCCGGGTGCTG
GTGGGGCTCCTGCCGTATCGCCAGGCCAACGCCTGGTCGCGGCTCGAGCCCTATGGCATGCTGATCATCATCGTGCTGGT
CTTCTTCACCAACCTGTTTTCCTATGTCATATCGCCGCTGCTGGGCGCTGCCGTCCATCTGCTGGCAGGTCCCCAGAGTG
GGCTGGTGCTGGGAGTGACCAGCCTGATGATGCGCTGA

Upstream 100 bases:

>100_bases
AGGCGTTAAGAGTGAGGGGTGAGGCGTAAGGGGGCGCGATTGACTTTGCCGGCGCACTCTGTTAGGTATAGACACCTTTT
TTGACGCTAAAAGGAGCACA

Downstream 100 bases:

>100_bases
AGCGAAAGTCGCCATTACCCATCATGCTTCCCGCTGGTCAGGGGGTATGAAGCCATAAGGAGTCGTGATAGATGAAAGAG
CGTGTTGTCAGCGGCATGAG

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MDDFLLKISVMLVPGMLAITCHEVSHGYIAWHFGDPTARMLGRLTLNPLKHLDPIGTLMIFFIGIGWAKPVPVVFENLRN
PKKDMIWVAAAGPITNLVLAALSALLLRGVVALESPDALSPATFIVEPLVLMLAFSVYINLLLSIFNMIPLPPLDGGRVL
VGLLPYRQANAWSRLEPYGMLIIIVLVFFTNLFSYVISPLLGAAVHLLAGPQSGLVLGVTSLMMR

Sequences:

>Translated_225_residues
MDDFLLKISVMLVPGMLAITCHEVSHGYIAWHFGDPTARMLGRLTLNPLKHLDPIGTLMIFFIGIGWAKPVPVVFENLRN
PKKDMIWVAAAGPITNLVLAALSALLLRGVVALESPDALSPATFIVEPLVLMLAFSVYINLLLSIFNMIPLPPLDGGRVL
VGLLPYRQANAWSRLEPYGMLIIIVLVFFTNLFSYVISPLLGAAVHLLAGPQSGLVLGVTSLMMR
>Mature_225_residues
MDDFLLKISVMLVPGMLAITCHEVSHGYIAWHFGDPTARMLGRLTLNPLKHLDPIGTLMIFFIGIGWAKPVPVVFENLRN
PKKDMIWVAAAGPITNLVLAALSALLLRGVVALESPDALSPATFIVEPLVLMLAFSVYINLLLSIFNMIPLPPLDGGRVL
VGLLPYRQANAWSRLEPYGMLIIIVLVFFTNLFSYVISPLLGAAVHLLAGPQSGLVLGVTSLMMR

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24508; Mature: 24508

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDFLLKISVMLVPGMLAITCHEVSHGYIAWHFGDPTARMLGRLTLNPLKHLDPIGTLMI
CCCHHHHHHHHHHCCHHHEEHEECCCCEEEEEECCHHHHHHHHHHCCHHHHCCHHHHHHH
FFIGIGWAKPVPVVFENLRNPKKDMIWVAAAGPITNLVLAALSALLLRGVVALESPDALS
HHHHCCCCCCHHHHHHHCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PATFIVEPLVLMLAFSVYINLLLSIFNMIPLPPLDGGRVLVGLLPYRQANAWSRLEPYGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHCCCCCCCCHHHH
LIIIVLVFFTNLFSYVISPLLGAAVHLLAGPQSGLVLGVTSLMMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDDFLLKISVMLVPGMLAITCHEVSHGYIAWHFGDPTARMLGRLTLNPLKHLDPIGTLMI
CCCHHHHHHHHHHCCHHHEEHEECCCCEEEEEECCHHHHHHHHHHCCHHHHCCHHHHHHH
FFIGIGWAKPVPVVFENLRNPKKDMIWVAAAGPITNLVLAALSALLLRGVVALESPDALS
HHHHCCCCCCHHHHHHHCCCCCHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PATFIVEPLVLMLAFSVYINLLLSIFNMIPLPPLDGGRVLVGLLPYRQANAWSRLEPYGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHCCCCCCCCHHHH
LIIIVLVFFTNLFSYVISPLLGAAVHLLAGPQSGLVLGVTSLMMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]