Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 118580100

GI number: 118580100

Start: 1796827

End: 1797684

Strand: Reverse

Name: yebA [H]

Synonym: Ppro_1678

Alternate gene names: 118580100

Gene position: 1797684-1796827 (Counterclockwise)

Preceding gene: 118580105

Following gene: 118580087

Centisome position: 44.85

GC content: 60.14

Gene sequence:

>858_bases
ATGTTTATGTGCTTATCAGAAATCTCTCCCAGCGACAAGCCATTATTAGCCAGTCAGGCCACTAATTTGCGCCGCTGCAC
CGCTTTTCACGGCATTGCCTTCTCCCTGGCAATCTCCGTTGCGCTATCCCTGCTTTTCCCCGTTCGTTCCCACGGCGATG
TCTACCGTTTCGTCACTGTTGACGGCGTGGAGACATTTACCGACGCTCCGGTCAACAAACAGGCCAGGGTGATAATCAGG
GAACGCACCCGCAAGGAAGGGGAGAAAACCAGGGGCGAGAAGCGGCATGACATCTCGTTGGACGAGGTCATGGCGAAGAC
GGTACAGGCGGCCGTCAATCCCCGGCAGCAGAGCTTCGGCACGACGGAGCCGCGCCTCCCCCTGACCGGGGGCGTGATAA
CCTCGGGGGTCGGCATGCGTATCGACCCCATAGACGGAACTCCCCGCCTGCACAATGGCATCGACATCGCCGTCAGGGAG
GGAACACCGGTTACCGCTATTGCTCCGGGGATGGTGATCTACAGCGGCATGCGCTCCGGTTACGGCAATACGGTTCTGGT
CGAACATGACAACGGCCTGGTGACGCTCTACGCGCACAACAGCCGCCTCCTGGTTTCCAACGGCCAGTTGGTGGACAATT
CCACGGTCATCGCCCATTCCGGCAACACCGGTCGCTCCACCGGCCCGCACCTGCACTTCGAAGCCTGGCAGGCCGGGGTG
AACATGACCCCTGTCTTCATGCCCAACAGCGGAAAGCGCCTCCCCCTTGCCTCTGGAAGGACAGAAATCAGGTTTCACCG
GGAGATCATGGCCGACGGCTCGATCCTCTTCACCAACATCCACTCGCCAGTCCGCTGA

Upstream 100 bases:

>100_bases
CGGTTCCCCTGACGATCTTGTCAAAATACTTCAGCATTCCGGAAACTCCCATTGCGTGGTTGTGAATTGACAAACGGCAT
GATTGCTCTATAGTGAGCAA

Downstream 100 bases:

>100_bases
CGCCCGCTCTTTTGGGCGGAGCGCAGAACATCCCCTGTCTCAACCAACCCTTTCGGAACGGCATAGGACATGACATCCAT
CTGGTCGATGGCCAGGTATG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MFMCLSEISPSDKPLLASQATNLRRCTAFHGIAFSLAISVALSLLFPVRSHGDVYRFVTVDGVETFTDAPVNKQARVIIR
ERTRKEGEKTRGEKRHDISLDEVMAKTVQAAVNPRQQSFGTTEPRLPLTGGVITSGVGMRIDPIDGTPRLHNGIDIAVRE
GTPVTAIAPGMVIYSGMRSGYGNTVLVEHDNGLVTLYAHNSRLLVSNGQLVDNSTVIAHSGNTGRSTGPHLHFEAWQAGV
NMTPVFMPNSGKRLPLASGRTEIRFHREIMADGSILFTNIHSPVR

Sequences:

>Translated_285_residues
MFMCLSEISPSDKPLLASQATNLRRCTAFHGIAFSLAISVALSLLFPVRSHGDVYRFVTVDGVETFTDAPVNKQARVIIR
ERTRKEGEKTRGEKRHDISLDEVMAKTVQAAVNPRQQSFGTTEPRLPLTGGVITSGVGMRIDPIDGTPRLHNGIDIAVRE
GTPVTAIAPGMVIYSGMRSGYGNTVLVEHDNGLVTLYAHNSRLLVSNGQLVDNSTVIAHSGNTGRSTGPHLHFEAWQAGV
NMTPVFMPNSGKRLPLASGRTEIRFHREIMADGSILFTNIHSPVR
>Mature_285_residues
MFMCLSEISPSDKPLLASQATNLRRCTAFHGIAFSLAISVALSLLFPVRSHGDVYRFVTVDGVETFTDAPVNKQARVIIR
ERTRKEGEKTRGEKRHDISLDEVMAKTVQAAVNPRQQSFGTTEPRLPLTGGVITSGVGMRIDPIDGTPRLHNGIDIAVRE
GTPVTAIAPGMVIYSGMRSGYGNTVLVEHDNGLVTLYAHNSRLLVSNGQLVDNSTVIAHSGNTGRSTGPHLHFEAWQAGV
NMTPVFMPNSGKRLPLASGRTEIRFHREIMADGSILFTNIHSPVR

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=113, Percent_Identity=39.8230088495575, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082174, Length=130, Percent_Identity=35.3846153846154, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789099, Length=100, Percent_Identity=38, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082297, Length=103, Percent_Identity=38.8349514563107, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 31006; Mature: 31006

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMCLSEISPSDKPLLASQATNLRRCTAFHGIAFSLAISVALSLLFPVRSHGDVYRFVTV
CEEEECCCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
DGVETFTDAPVNKQARVIIRERTRKEGEKTRGEKRHDISLDEVMAKTVQAAVNPRQQSFG
CCCHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
TTEPRLPLTGGVITSGVGMRIDPIDGTPRLHNGIDIAVREGTPVTAIAPGMVIYSGMRSG
CCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCEEEEEECCCCEEEECCCHHEEHHHHCC
YGNTVLVEHDNGLVTLYAHNSRLLVSNGQLVDNSTVIAHSGNTGRSTGPHLHFEAWQAGV
CCCEEEEECCCCEEEEEECCCEEEEECCEEECCCEEEEECCCCCCCCCCEEEEHHHHCCC
NMTPVFMPNSGKRLPLASGRTEIRFHREIMADGSILFTNIHSPVR
CCCEEEECCCCCCCCCCCCCCEEEEEEHHHCCCCEEEEECCCCCC
>Mature Secondary Structure
MFMCLSEISPSDKPLLASQATNLRRCTAFHGIAFSLAISVALSLLFPVRSHGDVYRFVTV
CEEEECCCCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
DGVETFTDAPVNKQARVIIRERTRKEGEKTRGEKRHDISLDEVMAKTVQAAVNPRQQSFG
CCCHHHCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHCC
TTEPRLPLTGGVITSGVGMRIDPIDGTPRLHNGIDIAVREGTPVTAIAPGMVIYSGMRSG
CCCCCCCCCCCEEECCCCEEEECCCCCCCCCCCEEEEEECCCCEEEECCCHHEEHHHHCC
YGNTVLVEHDNGLVTLYAHNSRLLVSNGQLVDNSTVIAHSGNTGRSTGPHLHFEAWQAGV
CCCEEEEECCCCEEEEEECCCEEEEECCEEECCCEEEEECCCCCCCCCCEEEEHHHHCCC
NMTPVFMPNSGKRLPLASGRTEIRFHREIMADGSILFTNIHSPVR
CCCEEEECCCCCCCCCCCCCCEEEEEEHHHCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]