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The map label for this gene is cbiD

Identifier: 118579725

GI number: 118579725

Start: 1365918

End: 1367096

Strand: Reverse

Name: cbiD

Synonym: Ppro_1297

Alternate gene names: 118579725

Gene position: 1367096-1365918 (Counterclockwise)

Preceding gene: 118579726

Following gene: 118579724

Centisome position: 34.11

GC content: 65.99

Gene sequence:

>1179_bases
ATGAAAAGAGAATCTTCGACACAACTGAGGGCCGGCTTTACCACCGGCACCTGCGCAGCCGCCGCAGCCAAAGGCGCGGC
GCTCATGCTGCGTGACCAGTGCCTTTGTGACCAGGTTACCCTGCGGCTCCCGACCGGCATATCCGCCACATTCAGGCTGG
AAGGCCAGGAGTTCAGCTCCAGCAGCGCCTCCTGCTTCGTGGTCAAGGACGCGGGCGATGATCCGGACATAACCAACGGG
GCCGAGCTGCATGCCCGGGTGACAGTCCCCCCGCCCCTCCCATTAGCGCAGGGAGACATGGTCGAAATCACGGGAGGAAC
CGGTATCGGCAGGGCCACAAAACCGGGACTGGCGGTAGCCCCGGGGGAGTGGGCCATAAACCCCGTTCCCCGGCGGATGA
TCCAGGAGGCGGTGGGAGAGGTTTTCGCGGACCGGCGGGTCCTGGTCCAGATATCCATCCCGGATGGTGAACTGCGGGCG
CAGAAAACCCTCAACGCCCGCCTGGGGATCCTGGGCGGCCTCTCCATCCTCGGCACCACCGGCATCGTCCGCCCCATCTC
CGCCAAGGCCTGGACCGATACCATCGATACCGCCCTGGATGTGGCCCGGGCCTGTGGCTGCGCAACGGTCGTCTTCTCCA
CCGGCCGCACCAGTGAACTGGCTGCACAGGAGTGGCTCAAGGTTCGAGGTGCAAGGTTCGACTTCGGGGACCAGGAATCC
GGGAACGCAGACCGGGAACCGGGAACCATGTACCTTGAACCGCTTCCGGAGGAAGCGTTTGTCATGATGGGCGACCACGT
GGCCCATGCCCTGCGCTCGGCCCGGGAGCGCGGGTTCCACCAGCCGGTGATCGCCTGCCAGTATGCCAAGCTGGTCAAGA
TCGCCTGCGGCTACGAGAACACCCACGCCGCCGCCTCGGACATGGACCTGGCGCGGCTGCGCGCATGGGCAGTGGAGGCG
GAGCTTCCTTCCCGAGTGGTCGAGACCATCGCCAGCGCCAACACGGCCCGCGAGATTGCCGTCTCCACCGGCTTCGACCC
CGCTCTCCTGACCCTTACCGCCCGGAAGGCGCTCCAGGCAAGCCAGGGCCACGCCACCGGTGCGCATCCGCTCTTCGTGG
TTGCCGACTATGGCGGCCGGATCGTCTTCCATTCGCTCCCCGCGGAAAACAACGCTTAG

Upstream 100 bases:

>100_bases
CCGCACGGCCGTAAGAATTGGTTTTCAGCGGTTTTCCGGATGCCTTTGTGCCTTTCTGTGAGTACGCTGTTTTCGCACTC
ACCCTGAAGGCACACTCCCC

Downstream 100 bases:

>100_bases
CCCCCCGGCATCTCCTCGGTTTGAGGACCCTTCGGGCTATTTTTCCTATCACATCGCCCAAAAGGTATGCTAGTATCCGG
AGCTCTTTAGGTTACGTGAG

Product: cobalamin (vitamin B12) biosynthesis CbiD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MKRESSTQLRAGFTTGTCAAAAAKGAALMLRDQCLCDQVTLRLPTGISATFRLEGQEFSSSSASCFVVKDAGDDPDITNG
AELHARVTVPPPLPLAQGDMVEITGGTGIGRATKPGLAVAPGEWAINPVPRRMIQEAVGEVFADRRVLVQISIPDGELRA
QKTLNARLGILGGLSILGTTGIVRPISAKAWTDTIDTALDVARACGCATVVFSTGRTSELAAQEWLKVRGARFDFGDQES
GNADREPGTMYLEPLPEEAFVMMGDHVAHALRSARERGFHQPVIACQYAKLVKIACGYENTHAAASDMDLARLRAWAVEA
ELPSRVVETIASANTAREIAVSTGFDPALLTLTARKALQASQGHATGAHPLFVVADYGGRIVFHSLPAENNA

Sequences:

>Translated_392_residues
MKRESSTQLRAGFTTGTCAAAAAKGAALMLRDQCLCDQVTLRLPTGISATFRLEGQEFSSSSASCFVVKDAGDDPDITNG
AELHARVTVPPPLPLAQGDMVEITGGTGIGRATKPGLAVAPGEWAINPVPRRMIQEAVGEVFADRRVLVQISIPDGELRA
QKTLNARLGILGGLSILGTTGIVRPISAKAWTDTIDTALDVARACGCATVVFSTGRTSELAAQEWLKVRGARFDFGDQES
GNADREPGTMYLEPLPEEAFVMMGDHVAHALRSARERGFHQPVIACQYAKLVKIACGYENTHAAASDMDLARLRAWAVEA
ELPSRVVETIASANTAREIAVSTGFDPALLTLTARKALQASQGHATGAHPLFVVADYGGRIVFHSLPAENNA
>Mature_392_residues
MKRESSTQLRAGFTTGTCAAAAAKGAALMLRDQCLCDQVTLRLPTGISATFRLEGQEFSSSSASCFVVKDAGDDPDITNG
AELHARVTVPPPLPLAQGDMVEITGGTGIGRATKPGLAVAPGEWAINPVPRRMIQEAVGEVFADRRVLVQISIPDGELRA
QKTLNARLGILGGLSILGTTGIVRPISAKAWTDTIDTALDVARACGCATVVFSTGRTSELAAQEWLKVRGARFDFGDQES
GNADREPGTMYLEPLPEEAFVMMGDHVAHALRSARERGFHQPVIACQYAKLVKIACGYENTHAAASDMDLARLRAWAVEA
ELPSRVVETIASANTAREIAVSTGFDPALLTLTARKALQASQGHATGAHPLFVVADYGGRIVFHSLPAENNA

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_PELPD (A1ANJ7)

Other databases:

- EMBL:   CP000482
- RefSeq:   YP_900975.1
- ProteinModelPortal:   A1ANJ7
- SMR:   A1ANJ7
- STRING:   A1ANJ7
- GeneID:   4573174
- GenomeReviews:   CP000482_GR
- KEGG:   ppd:Ppro_1297
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   TTGIARP
- ProtClustDB:   CLSK829046
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 41488; Mature: 41488

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRESSTQLRAGFTTGTCAAAAAKGAALMLRDQCLCDQVTLRLPTGISATFRLEGQEFSS
CCCCCCCCEEECCCCCHHHHHHHCCCEEEEHHHHHHCCEEEECCCCCCEEEEECCCCCCC
SSASCFVVKDAGDDPDITNGAELHARVTVPPPLPLAQGDMVEITGGTGIGRATKPGLAVA
CCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEC
PGEWAINPVPRRMIQEAVGEVFADRRVLVQISIPDGELRAQKTLNARLGILGGLSILGTT
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCC
GIVRPISAKAWTDTIDTALDVARACGCATVVFSTGRTSELAAQEWLKVRGARFDFGDQES
CCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
GNADREPGTMYLEPLPEEAFVMMGDHVAHALRSARERGFHQPVIACQYAKLVKIACGYEN
CCCCCCCCEEEECCCCCHHHEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
THAAASDMDLARLRAWAVEAELPSRVVETIASANTAREIAVSTGFDPALLTLTARKALQA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHH
SQGHATGAHPLFVVADYGGRIVFHSLPAENNA
CCCCCCCCCEEEEEEECCCEEEEEECCCCCCC
>Mature Secondary Structure
MKRESSTQLRAGFTTGTCAAAAAKGAALMLRDQCLCDQVTLRLPTGISATFRLEGQEFSS
CCCCCCCCEEECCCCCHHHHHHHCCCEEEEHHHHHHCCEEEECCCCCCEEEEECCCCCCC
SSASCFVVKDAGDDPDITNGAELHARVTVPPPLPLAQGDMVEITGGTGIGRATKPGLAVA
CCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCEEEC
PGEWAINPVPRRMIQEAVGEVFADRRVLVQISIPDGELRAQKTLNARLGILGGLSILGTT
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHHCCC
GIVRPISAKAWTDTIDTALDVARACGCATVVFSTGRTSELAAQEWLKVRGARFDFGDQES
CCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
GNADREPGTMYLEPLPEEAFVMMGDHVAHALRSARERGFHQPVIACQYAKLVKIACGYEN
CCCCCCCCEEEECCCCCHHHEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
THAAASDMDLARLRAWAVEAELPSRVVETIASANTAREIAVSTGFDPALLTLTARKALQA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEEECCCCHHHHHHHHHHHHHH
SQGHATGAHPLFVVADYGGRIVFHSLPAENNA
CCCCCCCCCEEEEEEECCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA