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The map label for this gene is tnpR [H]

Identifier: 118579557

GI number: 118579557

Start: 1166058

End: 1166612

Strand: Direct

Name: tnpR [H]

Synonym: Ppro_1125

Alternate gene names: 118579557

Gene position: 1166058-1166612 (Clockwise)

Preceding gene: 118579556

Following gene: 118579558

Centisome position: 29.09

GC content: 56.58

Gene sequence:

>555_bases
ATGAGCGGTCAGAGAATAGGCTATGTGAGGGTGTCCAGTATTGACCAAAACTGCGACAGGCAGCTTGACGGCATCGAACT
GGACCGAGTTTTCACCGATAAGGCATCAGGAAAAGACGTGAGCAGACCGGCACTCGCCGAGATGGTGCGCTTCGTGCGGG
AAGGGGATCGAATCGTTGTCCATTCGCTTGATCGTCTCGCCCGCAACCTGGATGACCTGAGAAAACTGGTATCCGATCTT
ACCGGGCGCGGTGTCACCGTCGAGTTCGTCAAAGAGAATCTTACCTTCTCTGGTGATGACTCGCCCATGTCAACCCTGCT
ACTATCCGTCATGGGGGCTTTCGCCGAGTTCGAGCGGGCGCTTATCAGGGAGCGTCAACGTGAAGGTATCGCCATCGCCA
AGCAGGCAGGAGCCTACAAGGGCCGCAAACGGGAAATGTCGGATGAGCGAATTGCCGAGATCAAGCGGCGGGTGGCCAAT
GGTGACAAGAAGGCCGCGATAGCCCGCGACATGGGAATCAGCCGGGAGACGGTTTACCAGTACCTCAGAAGTTGA

Upstream 100 bases:

>100_bases
TTCGCGTCAGATATGGGTGGTGTACTCTATTTGCTTGACACTTATTGTGAAGGGTAATAGACTTAAACCTGACACAATTG
AAACACAACGGGGGGCTGAT

Downstream 100 bases:

>100_bases
AAGATGAGACAGCCAGCGCCAGACCTACTGGAGCCGATCCACAACGGCCTGGTGCAGGCTGTCCTGGTTTCATGGCCGGA
TTCCTTCGCTAGAACATCGA

Product: resolvase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSGQRIGYVRVSSIDQNCDRQLDGIELDRVFTDKASGKDVSRPALAEMVRFVREGDRIVVHSLDRLARNLDDLRKLVSDL
TGRGVTVEFVKENLTFSGDDSPMSTLLLSVMGAFAEFERALIRERQREGIAIAKQAGAYKGRKREMSDERIAEIKRRVAN
GDKKAAIARDMGISRETVYQYLRS

Sequences:

>Translated_184_residues
MSGQRIGYVRVSSIDQNCDRQLDGIELDRVFTDKASGKDVSRPALAEMVRFVREGDRIVVHSLDRLARNLDDLRKLVSDL
TGRGVTVEFVKENLTFSGDDSPMSTLLLSVMGAFAEFERALIRERQREGIAIAKQAGAYKGRKREMSDERIAEIKRRVAN
GDKKAAIARDMGISRETVYQYLRS
>Mature_183_residues
SGQRIGYVRVSSIDQNCDRQLDGIELDRVFTDKASGKDVSRPALAEMVRFVREGDRIVVHSLDRLARNLDDLRKLVSDLT
GRGVTVEFVKENLTFSGDDSPMSTLLLSVMGAFAEFERALIRERQREGIAIAKQAGAYKGRKREMSDERIAEIKRRVANG
DKKAAIARDMGISRETVYQYLRS

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=180, Percent_Identity=38.8888888888889, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1787827, Length=186, Percent_Identity=32.7956989247312, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI1787638, Length=183, Percent_Identity=32.7868852459016, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 20742; Mature: 20611

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00018 EF_HAND_1 ; PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGQRIGYVRVSSIDQNCDRQLDGIELDRVFTDKASGKDVSRPALAEMVRFVREGDRIVV
CCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHH
HSLDRLARNLDDLRKLVSDLTGRGVTVEFVKENLTFSGDDSPMSTLLLSVMGAFAEFERA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIAIAKQAGAYKGRKREMSDERIAEIKRRVANGDKKAAIARDMGISRETVYQ
HHHHHHHCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
YLRS
HHHC
>Mature Secondary Structure 
SGQRIGYVRVSSIDQNCDRQLDGIELDRVFTDKASGKDVSRPALAEMVRFVREGDRIVV
CCCEEEEEEECCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHH
HSLDRLARNLDDLRKLVSDLTGRGVTVEFVKENLTFSGDDSPMSTLLLSVMGAFAEFERA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LIRERQREGIAIAKQAGAYKGRKREMSDERIAEIKRRVANGDKKAAIARDMGISRETVYQ
HHHHHHHCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
YLRS
HHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]