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The map label for this gene is intD [H]

Identifier: 118579558

GI number: 118579558

Start: 1166782

End: 1167885

Strand: Direct

Name: intD [H]

Synonym: Ppro_1126

Alternate gene names: 118579558

Gene position: 1166782-1167885 (Clockwise)

Preceding gene: 118579557

Following gene: 118579560

Centisome position: 29.11

GC content: 57.43

Gene sequence:

>1104_bases
ATGGCAAAGTCGAGCCCTGGAATCTACAGGCGCGGTAAGACGTTCTGGATCACCTACATGGGGGTGGACGGAAAGCAGCA
GTGGGAGAGCACGCGTAGCAAACTGAAGGCCGACGCCGATTATCTGCTTGCCTGCCGGAAAAAAGAAGTTGCCGAGGGGA
TTACTCCCGTCACATTCAACCGGAAGAAATACACCACGACGTTCGACCAGCTGGCGGAGAAGTACCTGGAGTACTGCAAG
GCGCAACGGGACTACAAGAGCAAGGCTGGTCGTGTTAGGAGACTGCAACGGACGTTTGGCGAAATGCGGTTGATCGACAT
CACGCTCGAAGAACTGGAGCGGTATCAGTCGGCCAGGTGTACCGAGGCGAAGCAGCCGAAAAAAGAGGGGGGTGTGTCGT
CGGGAGCCGTTTCACCAGCTACCGTCAACCGCGAGTTGACCGCCCTGAAGAACATGTTTACCAAGGCGGAACAGTGGGGG
TTGATTCCGGATTCAACTTTGAAGACCGTGCGAAAAGTCCGGCTGACGAAGGAGAACAACAGGCGGCTGCGGTTTCTTGC
CGTGGCCGAGATGACCGCGCTTGTGGATTCTTGCTCCAGGGGATTGCGGGAAATCGTCGTGTTCGCGCTCAATACCGGCT
GTAGACGTGGGGAGATTCTTTCTCTCACATGGGACCACGTTGACCTGAAGCACGGCTTCATCAGGATAGCGGACAGCAAA
AACGGCGAATCGCGCGACATCCCCATCAACGCCGCGCTCGCTGACATGTTCAAGGGGGTGGTGCGCCGCATCGACTCGCC
CTATGTGTTCACGAATCCCGACACCGGCACCAGATATCAGGACGTGAAGCGTTCCTTCGCCACCGCCTGTCGCAGGGCCG
CGATTATGAATTTCCATTTCCACGATCTTCGCCACACGTTTGCGAGCCACCTGGTGATGAACGGGGTGGACCTTACCACC
GTCTCCCGGCTCCTGGGCCACAAGAGCCTGACCATGACCTTGCGGTACTCCCACCTTGCACCCGACCACCTGAAGAAGGC
CGTTGAAAGGTTGACGTGGAAAGACGGCCCGACAATCGAACAGCAGCTGTTTCCAGCAGTCTGA

Upstream 100 bases:

>100_bases
TCATGGCCGGATTCCTTCGCTAGAACATCGATGCGGTAGTTGGTGAACAGGGGGCTATGGTCAGGGCTGGGCGCGGAATA
TGAACAGGAGGGGGGACTGT

Downstream 100 bases:

>100_bases
ACCATTATGGGAGCAGGGCGCGACACACGTCCTTGCCCCTGTGTCAATCTTTATTTCAGGGGCGTGCTGTTTATTGCAAA
GATCACGAAATCCTAAAGTC

Product: phage integrase family protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MAKSSPGIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNRKKYTTTFDQLAEKYLEYCK
AQRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWG
LIPDSTLKTVRKVRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIADSK
NGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTT
VSRLLGHKSLTMTLRYSHLAPDHLKKAVERLTWKDGPTIEQQLFPAV

Sequences:

>Translated_367_residues
MAKSSPGIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNRKKYTTTFDQLAEKYLEYCK
AQRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWG
LIPDSTLKTVRKVRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIADSK
NGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTT
VSRLLGHKSLTMTLRYSHLAPDHLKKAVERLTWKDGPTIEQQLFPAV
>Mature_366_residues
AKSSPGIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFNRKKYTTTFDQLAEKYLEYCKA
QRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGL
IPDSTLKTVRKVRLTKENNRRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIADSKN
GESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMNFHFHDLRHTFASHLVMNGVDLTTV
SRLLGHKSLTMTLRYSHLAPDHLKKAVERLTWKDGPTIEQQLFPAV

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=370, Percent_Identity=27.2972972972973, Blast_Score=134, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41905; Mature: 41774

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSSPGIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFN
CCCCCCCCEECCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEC
RKKYTTTFDQLAEKYLEYCKAQRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSARC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCC
TEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTKENN
CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
RRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIADSK
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEECCCCEEEEECCC
NGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMNFHF
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVERLTWKDGPTIE
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
QQLFPAV
HHHCCCC
>Mature Secondary Structure 
AKSSPGIYRRGKTFWITYMGVDGKQQWESTRSKLKADADYLLACRKKEVAEGITPVTFN
CCCCCCCEECCCEEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEC
RKKYTTTFDQLAEKYLEYCKAQRDYKSKAGRVRRLQRTFGEMRLIDITLEELERYQSARC
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHCC
TEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVRLTKENN
CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
RRLRFLAVAEMTALVDSCSRGLREIVVFALNTGCRRGEILSLTWDHVDLKHGFIRIADSK
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEECCCCEEEEECCC
NGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRRAAIMNFHF
CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
HDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVERLTWKDGPTIE
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCHH
QQLFPAV
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]