| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is amiC [H]
Identifier: 118579495
GI number: 118579495
Start: 1112040
End: 1113338
Strand: Reverse
Name: amiC [H]
Synonym: Ppro_1062
Alternate gene names: 118579495
Gene position: 1113338-1112040 (Counterclockwise)
Preceding gene: 118579497
Following gene: 118579494
Centisome position: 27.78
GC content: 63.51
Gene sequence:
>1299_bases ATGAATCGCTCCGGCGGAATGCCGCTCCGGGAAGAAGCCAGCCATATGAACAGAATCCTGCACATACTCGTCTGCCTGCT GCTGACCTGCCTGCTGCCACTGCATAGCCAGGCCGCCAGGAAGAGCCAGACCGCCTTCACGTCACAGAGTTCCGCCACCC GGCGCCCCCTGGCCGTCCTGAACGACATCAAGCACTGGTCTACCCCCGACTACACCCGCGTTTCAATAGAACTGGACCAG GACGTGGTCTGGGAAGCCCATGAACTGGGCAAGGGGGGCAACGGCAAACAGGGCAGGATCTTCATCGACATCAAACGCAG CAGGCTGGCCATGGGGATCAAAAACATCACCATCGGCGACGGCCTGCTGAAGGGAGTGCGCGTGGCCCAGTACCGGCCAG AGGTGGTGCGGGTGGTGCTGGACACGCAGAATATCAAGAGCTACAAGGTATTTCCCCTCTCCACCCCGGCGCGCCTGGTG ATCGATGTGCGCGGCGAACGCCCCACCGAGATTTCCCGCATGGAGCAGACACTCAGCACGCCCCCCGCCCCGACAGCGGA GCCCGGACGCAGCGAAGTGGCGGCGGTAACGAAGCGAACAAAGTCGCCGCGCAAGGTCAGCCACTCCAAGATTCGCCGCA TCGTGCTGGATCCCGGCCATGGGGGCCACGACCCGGGAGCCGTGGGAGCGGGCGGCACCCAGGAGAAGGATGTGGTGCTG GCCATCGGACTCAAGCTGCGCGAGCTACTTCGGGAGGAACTGGGGCTGAATGTGGTCATGACCCGCACCAGCGACGTCTT CATCCCCCTGGAGGAGCGCACCGCCATCGCCAACAAGGTCAACGCCGACCTGTTCCTCTCGATCCACGCCAATGCCGCCC CCAACCACGCCGCATCGGGCATCGAAACCTACTACCTGAGCCTCGCCAAGACGGAGAAGGCGGCCCGCCTGGCGGCCAAG GAAAACGGCACAACCCTGGAGAAGGTCAGCGTGCTGCAGGCCATCCTGTTCGACCTGATGGCCAACTACAAGCTGAACGA CTCGGCACACCTGGCCAACGACGTGCAGAAGGCGCTGCACAAAAAGATCCACGGACTGCATGCCGACGTCAGGAACCTGG GGGTCAAGCAGGGCCCCTTCTATGTCCTGGTGGGCGCCACCATGCCCAGCATCCTGGTGGAGACCGCCTTTGTCAGCAAC GTCGAGGAGGAAGCCCGCCTGAAGGACCCCGCCTACCAGGAAGCTACCGCCGAGGGGATCCTGGAGGGTGTGCGCGCCTA CATCTCCAGCCTGAAGTAA
Upstream 100 bases:
>100_bases TTGCAAAAGATTGAACAAACTGAATATTTCTGCTATGACACTCCCTGGGCCCGTTGGAAACATCCTTCCCGAATGCCCAT TTCGGGAGAGGGCAACAATC
Downstream 100 bases:
>100_bases CCCGCCGCGATCCGGCGTGATGAGACCTCCACGAGGAGCATGAATATGACCGATGACAACAAGCTGAATGGCGACACCGC GCTCAGCCCCCATGACACCC
Product: N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MNRSGGMPLREEASHMNRILHILVCLLLTCLLPLHSQAARKSQTAFTSQSSATRRPLAVLNDIKHWSTPDYTRVSIELDQ DVVWEAHELGKGGNGKQGRIFIDIKRSRLAMGIKNITIGDGLLKGVRVAQYRPEVVRVVLDTQNIKSYKVFPLSTPARLV IDVRGERPTEISRMEQTLSTPPAPTAEPGRSEVAAVTKRTKSPRKVSHSKIRRIVLDPGHGGHDPGAVGAGGTQEKDVVL AIGLKLRELLREELGLNVVMTRTSDVFIPLEERTAIANKVNADLFLSIHANAAPNHAASGIETYYLSLAKTEKAARLAAK ENGTTLEKVSVLQAILFDLMANYKLNDSAHLANDVQKALHKKIHGLHADVRNLGVKQGPFYVLVGATMPSILVETAFVSN VEEEARLKDPAYQEATAEGILEGVRAYISSLK
Sequences:
>Translated_432_residues MNRSGGMPLREEASHMNRILHILVCLLLTCLLPLHSQAARKSQTAFTSQSSATRRPLAVLNDIKHWSTPDYTRVSIELDQ DVVWEAHELGKGGNGKQGRIFIDIKRSRLAMGIKNITIGDGLLKGVRVAQYRPEVVRVVLDTQNIKSYKVFPLSTPARLV IDVRGERPTEISRMEQTLSTPPAPTAEPGRSEVAAVTKRTKSPRKVSHSKIRRIVLDPGHGGHDPGAVGAGGTQEKDVVL AIGLKLRELLREELGLNVVMTRTSDVFIPLEERTAIANKVNADLFLSIHANAAPNHAASGIETYYLSLAKTEKAARLAAK ENGTTLEKVSVLQAILFDLMANYKLNDSAHLANDVQKALHKKIHGLHADVRNLGVKQGPFYVLVGATMPSILVETAFVSN VEEEARLKDPAYQEATAEGILEGVRAYISSLK >Mature_432_residues MNRSGGMPLREEASHMNRILHILVCLLLTCLLPLHSQAARKSQTAFTSQSSATRRPLAVLNDIKHWSTPDYTRVSIELDQ DVVWEAHELGKGGNGKQGRIFIDIKRSRLAMGIKNITIGDGLLKGVRVAQYRPEVVRVVLDTQNIKSYKVFPLSTPARLV IDVRGERPTEISRMEQTLSTPPAPTAEPGRSEVAAVTKRTKSPRKVSHSKIRRIVLDPGHGGHDPGAVGAGGTQEKDVVL AIGLKLRELLREELGLNVVMTRTSDVFIPLEERTAIANKVNADLFLSIHANAAPNHAASGIETYYLSLAKTEKAARLAAK ENGTTLEKVSVLQAILFDLMANYKLNDSAHLANDVQKALHKKIHGLHADVRNLGVKQGPFYVLVGATMPSILVETAFVSN VEEEARLKDPAYQEATAEGILEGVRAYISSLK
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=398, Percent_Identity=34.4221105527638, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1788776, Length=226, Percent_Identity=41.1504424778761, Blast_Score=151, Evalue=8e-38, Organism=Escherichia coli, GI1790611, Length=449, Percent_Identity=29.1759465478842, Blast_Score=134, Evalue=9e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 47258; Mature: 47258
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRSGGMPLREEASHMNRILHILVCLLLTCLLPLHSQAARKSQTAFTSQSSATRRPLAVL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH NDIKHWSTPDYTRVSIELDQDVVWEAHELGKGGNGKQGRIFIDIKRSRLAMGIKNITIGD HHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHCCCCEEECH GLLKGVRVAQYRPEVVRVVLDTQNIKSYKVFPLSTPARLVIDVRGERPTEISRMEQTLST HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCC PPAPTAEPGRSEVAAVTKRTKSPRKVSHSKIRRIVLDPGHGGHDPGAVGAGGTQEKDVVL CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCEEE AIGLKLRELLREELGLNVVMTRTSDVFIPLEERTAIANKVNADLFLSIHANAAPNHAASG EECHHHHHHHHHHHCCEEEEEECCCEEEECHHHHHHHHHCCCEEEEEEECCCCCCHHHCC IETYYLSLAKTEKAARLAAKENGTTLEKVSVLQAILFDLMANYKLNDSAHLANDVQKALH HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KKIHGLHADVRNLGVKQGPFYVLVGATMPSILVETAFVSNVEEEARLKDPAYQEATAEGI HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHH LEGVRAYISSLK HHHHHHHHHHCC >Mature Secondary Structure MNRSGGMPLREEASHMNRILHILVCLLLTCLLPLHSQAARKSQTAFTSQSSATRRPLAVL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH NDIKHWSTPDYTRVSIELDQDVVWEAHELGKGGNGKQGRIFIDIKRSRLAMGIKNITIGD HHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHHCCCCEEECH GLLKGVRVAQYRPEVVRVVLDTQNIKSYKVFPLSTPARLVIDVRGERPTEISRMEQTLST HHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCC PPAPTAEPGRSEVAAVTKRTKSPRKVSHSKIRRIVLDPGHGGHDPGAVGAGGTQEKDVVL CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCEEE AIGLKLRELLREELGLNVVMTRTSDVFIPLEERTAIANKVNADLFLSIHANAAPNHAASG EECHHHHHHHHHHHCCEEEEEECCCEEEECHHHHHHHHHCCCEEEEEEECCCCCCHHHCC IETYYLSLAKTEKAARLAAKENGTTLEKVSVLQAILFDLMANYKLNDSAHLANDVQKALH HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH KKIHGLHADVRNLGVKQGPFYVLVGATMPSILVETAFVSNVEEEARLKDPAYQEATAEGI HHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHH LEGVRAYISSLK HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]