Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 118578928

GI number: 118578928

Start: 511084

End: 511569

Strand: Reverse

Name: rlpA [C]

Synonym: Ppro_0489

Alternate gene names: 118578928

Gene position: 511569-511084 (Counterclockwise)

Preceding gene: 118578929

Following gene: 118578922

Centisome position: 12.76

GC content: 59.67

Gene sequence:

>486_bases
ATGTTTAGCCTACGTCATCTAAAAACCTTGGTTTTTCCACTCTGTGCGTTCATGAGCCTGGCTCCGGCAGGCACCGCACG
CGCCGAACAGGGGAGCAAGGGAGTGACCGCGCCCCGTTCCAATGATTCATCGTCCCCCATAACATCACTGTTGGAAGGAC
TGGTTCACAAGGCCAGTCCGCTGCAACCGGTGATCGGCTTGGCCACCTATTACGCCAAACGCTTCGAGGGGCGCAGGACC
TCATCAGGTCACCGCTACCACCCCGACCTGATGACCGCCGCCCACCACAGCCTGCCACTGGGTACCGTTGTGCGCGTAGT
CAACCCGGCCACGAAACAGGAAGTTCACGTCACCGTCAACGACCGTTGCGCACGCAAGTCGTTCCACTTCATCGACCTCT
CCCGGGCAGCCGCACAGAAGATCGGTCTCTGGCGCAGGGGAAGCATGAAAGTAGTCATCATCCCCCTGCTGGAAGAGCCG
GTCTGA

Upstream 100 bases:

>100_bases
CTTCGAACCACGCGATTTCAAAGAGGGAATCAGGGAATACCTTAAAAAGGGGCATGCAAAGACTTGACCCAGGAGCCCGA
TTAATGTATAAAACCGTTCT

Downstream 100 bases:

>100_bases
CAATCAATCCTCGCTCCGCTCCCCCGTTGACAGTGTCACCCTGAATGTGGTCCCTTCGCTAATGCGGCTGTCCACCTCAA
TGCGCCCCCCCAATTGTTCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MFSLRHLKTLVFPLCAFMSLAPAGTARAEQGSKGVTAPRSNDSSSPITSLLEGLVHKASPLQPVIGLATYYAKRFEGRRT
SSGHRYHPDLMTAAHHSLPLGTVVRVVNPATKQEVHVTVNDRCARKSFHFIDLSRAAAQKIGLWRRGSMKVVIIPLLEEP
V

Sequences:

>Translated_161_residues
MFSLRHLKTLVFPLCAFMSLAPAGTARAEQGSKGVTAPRSNDSSSPITSLLEGLVHKASPLQPVIGLATYYAKRFEGRRT
SSGHRYHPDLMTAAHHSLPLGTVVRVVNPATKQEVHVTVNDRCARKSFHFIDLSRAAAQKIGLWRRGSMKVVIIPLLEEP
V
>Mature_161_residues
MFSLRHLKTLVFPLCAFMSLAPAGTARAEQGSKGVTAPRSNDSSSPITSLLEGLVHKASPLQPVIGLATYYAKRFEGRRT
SSGHRYHPDLMTAAHHSLPLGTVVRVVNPATKQEVHVTVNDRCARKSFHFIDLSRAAAQKIGLWRRGSMKVVIIPLLEEP
V

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 17635; Mature: 17635

Theoretical pI: Translated: 11.01; Mature: 11.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLRHLKTLVFPLCAFMSLAPAGTARAEQGSKGVTAPRSNDSSSPITSLLEGLVHKASP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
LQPVIGLATYYAKRFEGRRTSSGHRYHPDLMTAAHHSLPLGTVVRVVNPATKQEVHVTVN
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEC
DRCARKSFHFIDLSRAAAQKIGLWRRGSMKVVIIPLLEEPV
CHHHHHCCCEEHHHHHHHHHHCCEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MFSLRHLKTLVFPLCAFMSLAPAGTARAEQGSKGVTAPRSNDSSSPITSLLEGLVHKASP
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
LQPVIGLATYYAKRFEGRRTSSGHRYHPDLMTAAHHSLPLGTVVRVVNPATKQEVHVTVN
CHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCEEEEEEC
DRCARKSFHFIDLSRAAAQKIGLWRRGSMKVVIIPLLEEPV
CHHHHHCCCEEHHHHHHHHHHCCEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]