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The map label for this gene is lcoR [C]

Identifier: 118480301

GI number: 118480301

Start: 5015779

End: 5016504

Strand: Reverse

Name: lcoR [C]

Synonym: BALH_4762

Alternate gene names: 118480301

Gene position: 5016504-5015779 (Counterclockwise)

Preceding gene: 118480302

Following gene: 118480300

Centisome position: 95.42

GC content: 40.91

Gene sequence:

>726_bases
ATGATTTTTGCTATACTAAACTGTACTATAATACAGGATGGAAGGAGGAGAATAATGAAGATACTTGTAGTGGACGATGA
GTCGAGTATTCGCAATTTGATTCGGATGCAGCTTGAGATGGAAGGATACGAAGTGCTCACGGCGGCTGATGGTAGAGAAG
CTTTAGAGAGATGGAATGAAGGACCGGATGTTTTGATTTTGGATGTTATGCTTCCAGATACAGATGGGTATGAATTACTT
CGTTTGTTCCGTGAGAAGGATAGGGATATTCCAGTACTCATGTTAACTGCGAAGAGTCAGATGAATGATAAATTGCTTGG
TTTGCAGCTTGGCGCTGATGATTACGTGACGAAGCCATTTAATTATGCTGAGCTTATTCTTCGGGTCAAGAATATGACGC
GGCGTGTGAAGAAGACAGAGGTAACGGTAAGCCATGAAGTAATCGAGGCGGGAGAGATAACAATCTGTCCTAAGGAAAGA
AAAGTGCATGTGAGTGGGCAAGAGATTCAGTTAACGTACAGAGAGTTTAATTTATGTCAGTTGTTTGTTTCCAATCCGCA
GCGTGTATTTATGAGAGATGAGTTACTTGAGAAAGTATGGGGATTTGAGTATATCGGAAATACGAGAGCGGTTGATATTA
TGGTGCAAAGATTGCGGAAGAAGTTAGGGAATAGCGGGGAATATATTAAGACAATTTATGGCGTTGGCTATAAACTGGAT
TGTTAA

Upstream 100 bases:

>100_bases
GACGTGCTGAATTTATTATTGCGAGTGTATAAGAGATGAAATATAAGAGGAGAGAGTATCGTCGACAAAATATGTTCGAC
AATACCCTCTCTTTTTTTAT

Downstream 100 bases:

>100_bases
GTGGTGATGGTATGTCTTTGAAAAGAAATATGGTGTTTGGAATCGTTGGACTGTTAATCCCGATTTTTGTTCTTTTGTAT
GCAGTTGTTTATATTACGTT

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MIFAILNCTIIQDGRRRIMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDTDGYELL
RLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITICPKER
KVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGEYIKTIYGVGYKLD
C

Sequences:

>Translated_241_residues
MIFAILNCTIIQDGRRRIMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDTDGYELL
RLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITICPKER
KVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGEYIKTIYGVGYKLD
C
>Mature_241_residues
MIFAILNCTIIQDGRRRIMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDTDGYELL
RLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITICPKER
KVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGEYIKTIYGVGYKLD
C

Specific function: This Protein Is A Positive Regulator For The Phosphate Regulon. Transcription Of This Operon Is Positively Regulated By Phob And Phor When Phosphate Is Limited. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=227, Percent_Identity=37.0044052863436, Blast_Score=160, Evalue=8e-41,
Organism=Escherichia coli, GI1786784, Length=226, Percent_Identity=35.3982300884956, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=35.5855855855856, Blast_Score=134, Evalue=5e-33,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=34.070796460177, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI2367329, Length=225, Percent_Identity=36, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=32.8828828828829, Blast_Score=128, Evalue=3e-31,
Organism=Escherichia coli, GI1786911, Length=226, Percent_Identity=33.6283185840708, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1790860, Length=223, Percent_Identity=36.322869955157, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=34.4978165938865, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1788394, Length=225, Percent_Identity=33.7777777777778, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI87082012, Length=224, Percent_Identity=30.8035714285714, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790552, Length=222, Percent_Identity=31.5315315315315, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=31.5789473684211, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI145693140, Length=230, Percent_Identity=32.6086956521739, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788550, Length=114, Percent_Identity=35.9649122807018, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790299, Length=111, Percent_Identity=36.036036036036, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788713, Length=169, Percent_Identity=31.3609467455621, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788191, Length=111, Percent_Identity=38.7387387387387, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787487, Length=101, Percent_Identity=35.6435643564356, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790437, Length=108, Percent_Identity=36.1111111111111, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI145693157, Length=122, Percent_Identity=33.6065573770492, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27984; Mature: 27984

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFAILNCTIIQDGRRRIMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNE
CEEEEEEEEEECCCHHEEEEEEEECCCHHHHHHHHHHHEECCEEEEEECCCHHHHHHCCC
GPDVLILDVMLPDTDGYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPF
CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCC
NYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQ
CHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCCEEECCCCCEEEECCCEEEEEEECCCEEE
LFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGEYIKTIYGVGYKLD
EEECCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCEEEC
C
C
>Mature Secondary Structure
MIFAILNCTIIQDGRRRIMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNE
CEEEEEEEEEECCCHHEEEEEEEECCCHHHHHHHHHHHEECCEEEEEECCCHHHHHHCCC
GPDVLILDVMLPDTDGYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPF
CCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCC
NYAELILRVKNMTRRVKKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQ
CHHHHHHHHHHHHHHHHHHEEEEEHHHCCCCCEEECCCCCEEEECCCEEEEEEECCCEEE
LFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSGEYIKTIYGVGYKLD
EEECCCHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCEEEC
C
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1554697 [H]