Click here to switch to the map view.

The map label for this gene is ydiU [C]

Identifier: 118478767

GI number: 118478767

Start: 3339240

End: 3340706

Strand: Direct

Name: ydiU [C]

Synonym: BALH_3159

Alternate gene names: 118478767

Gene position: 3339240-3340706 (Clockwise)

Preceding gene: 118478766

Following gene: 118478768

Centisome position: 63.52

GC content: 39.33

Gene sequence:

>1467_bases
ATGACTAAAAATAATGAAGTAGGTTGGAATTTAGATAATAGTTATGCTACTTTGCCACAATCATTTTATACAGAAATCCC
CCCTACTCCCGTAAGTTCACCGGAGTTAGTTAAACTAAACCATTCATTAGCAATATCTCTTGGCTTTAATCCTGAAGAAT
TGAAAAAAGAAGCCGAAATCGCTATTTTCGCTGGTAATGCACTCCCAGAAGGTGCTCATCCATTAGCGCAAGCATATGCT
GGTCATCAATTCGGACATTTTAATATGTTAGGCGACGGTCGTGCTCTTTTAATTGGTGAACAAATTACTCCTTCAGGTAA
ACGTTTTGACATTCAATTGAAAGGTTCTGGCCCTACTCCGTATTCACGCCGCGGTGATGGTCGTGCTGCACTCGGTCCAA
TGCTACGTGAATATATTATTAGCGAAGCAATGTATGCACTTGATATTCCAACTACCCGCAGCTTAGCAGTTGTCACAACT
GGGGAACCAACATATCGTGAAACAAAGTTACCTGGAGCTATTTTGACTAGAGTAGCAAGTAGCCATATACGCGTCGGCAC
ATTTCAATATGCTGCGGCTCGCGGTTCAATCGAGGATCTTCAATCACTAGCTGACTATACAATAAAAAGACATTATCCAG
AAATTGAAGCTCATGAAAACCGATATACTGCATTGCTACAAGAAGTCATAAAGAAACAAGCAAGCCTCATCGCTAAATGG
CAACTTGTTGGATTTATCCACGGTGTAATGAACACTGACAATATAACAATTAGCGGAGAAACAATTGATTACGGTCCTTG
TGCATTTATGGATAATTATGATCAAGGAACCGTATTTAGCTCGATTGATACACAAGGTCGCTACGCATATGGAAATCAGC
CATATATGGCCGCATGGGATCTCGCGCGACTAGCTGAATCTTTAATACCAATCCTACACGAAGATGAAGAAGAAGCATTA
AAGATTGCTCAAGACGAAATTTCAAAATTTAGCGTACAGTATGAAAAACAGTGGTTCATTGGAATGAAAAAGAAATTAGG
ACTATTTAGCAACGAAGAACAAGATCAATCACTTATTGAGCAACTTTTCAAAATGATGGAGAAATATAAAGCGGATTACA
CAAATACATTCCGTTCATTAACTCTTGATACGTTAGAAAATACGCCTCTATTCGATAGCCCTGAATTTAAAGAATGGTAC
AAACTGTGGCAATCTCGATTAGAAAAACAAGAAGAATCGAAAGAGAATGCCTACGAAATGATGAAAAATAATAACCCATC
CATCATCCCAAGAAACCATCGCGTAGAAGAAGCACTAGAAGCTGCTGTTACAAATGGCGACTATAGCGTAATGGAGAAAC
TTCTTGAAGCTCTAGCAAATCCTTATGCGTATTCTACAGATCAAGAAGAATACTGCGTTCCACCTGCGCCTACGAATCGT
CCTTATCGTACTTTTTGTGGGACTTGA

Upstream 100 bases:

>100_bases
TAGATTGCAAGGGGAAATATCATATTATACTTTTAGCTAATTTTACAAAGAATACATACGTACACATACATAATAAAAAA
ATAAACAAGGAGGAGATAAA

Downstream 100 bases:

>100_bases
TGGTTTAATATGTAAAAAAGGTGTGTTCATACAAATTGTGTGAACACACCCTTTTTATATTCCCACCTCTCAACTAGAAC
TTTAAAATGCCCCTCCCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MTKNNEVGWNLDNSYATLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEAL
KIAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIEQLFKMMEKYKADYTNTFRSLTLDTLENTPLFDSPEFKEWY
KLWQSRLEKQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALANPYAYSTDQEEYCVPPAPTNR
PYRTFCGT

Sequences:

>Translated_488_residues
MTKNNEVGWNLDNSYATLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYA
GHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTT
GEPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEAL
KIAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIEQLFKMMEKYKADYTNTFRSLTLDTLENTPLFDSPEFKEWY
KLWQSRLEKQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALANPYAYSTDQEEYCVPPAPTNR
PYRTFCGT
>Mature_487_residues
TKNNEVGWNLDNSYATLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEIAIFAGNALPEGAHPLAQAYAG
HQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTPYSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTG
EPTYRETKLPGAILTRVASSHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKWQ
LVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWDLARLAESLIPILHEDEEEALK
IAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIEQLFKMMEKYKADYTNTFRSLTLDTLENTPLFDSPEFKEWYK
LWQSRLEKQEESKENAYEMMKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALANPYAYSTDQEEYCVPPAPTNRP
YRTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=442, Percent_Identity=38.4615384615385, Blast_Score=280, Evalue=2e-75,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=40.1673640167364, Blast_Score=357, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6325034, Length=328, Percent_Identity=31.4024390243902, Blast_Score=163, Evalue=5e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55092; Mature: 54960

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKNNEVGWNLDNSYATLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEI
CCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEALKIAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QLFKMMEKYKADYTNTFRSLTLDTLENTPLFDSPEFKEWYKLWQSRLEKQEESKENAYEM
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALANPYAYSTDQEEYCVPPAPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCC
PYRTFCGT
CCCCCCCC
>Mature Secondary Structure 
TKNNEVGWNLDNSYATLPQSFYTEIPPTPVSSPELVKLNHSLAISLGFNPEELKKEAEI
CCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCEEEECCEEEEEECCCHHHHHCCCCE
AIFAGNALPEGAHPLAQAYAGHQFGHFNMLGDGRALLIGEQITPSGKRFDIQLKGSGPTP
EEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCC
YSRRGDGRAALGPMLREYIISEAMYALDIPTTRSLAVVTTGEPTYRETKLPGAILTRVAS
CCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCHHCCCCHHHHHHHHH
SHIRVGTFQYAAARGSIEDLQSLADYTIKRHYPEIEAHENRYTALLQEVIKKQASLIAKW
CCEEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QLVGFIHGVMNTDNITISGETIDYGPCAFMDNYDQGTVFSSIDTQGRYAYGNQPYMAAWD
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCHHHHH
LARLAESLIPILHEDEEEALKIAQDEISKFSVQYEKQWFIGMKKKLGLFSNEEQDQSLIE
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
QLFKMMEKYKADYTNTFRSLTLDTLENTPLFDSPEFKEWYKLWQSRLEKQEESKENAYEM
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MKNNNPSIIPRNHRVEEALEAAVTNGDYSVMEKLLEALANPYAYSTDQEEYCVPPAPTNR
HHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCC
PYRTFCGT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA