Click here to switch to the map view.

The map label for this gene is algU [H]

Identifier: 118476646

GI number: 118476646

Start: 1055462

End: 1055995

Strand: Direct

Name: algU [H]

Synonym: BALH_0922

Alternate gene names: 118476646

Gene position: 1055462-1055995 (Clockwise)

Preceding gene: 118476644

Following gene: 118476647

Centisome position: 20.08

GC content: 33.52

Gene sequence:

>534_bases
GTGGATGAATTAATGATAGAAGCGTTTGAAATAGAAGATAAGGAGGACCTTATCGACGAAATAATGAACAAGTATGGACA
AGAAGTCTTACAGCTTGTGTATTCATATGTGAATAATAAAGAGGTTGCGGAGGATGTAACGCAAGATATATTTGTGAAAT
GCTATAAATCTCTTCATACATATAAAGGGAATTCGAACTTAAAAACATGGTTATGGAGAATTGCGATTAATCATTGTAAG
GACTATTTAAAAAGTTGGTATAACAAAAAGGTCATCGTGACAGAGGATGACTTTACGTATATGGAGAGTCAAAAAGAAAG
TGTGGAACAAATAGTTATTCAAAATGCAGAGGATAGTAGGCTTGCTTCTGCAGTAATGAGTTTACCGATCAAATATCGAG
AAGTCATTTATCTATTTTATTATGAAGAGTTATCAATTAAAGAGATTGCTACGGTAATAGAAGTGAAGGAAAACACGATA
AAAACGAGGCTGAAAAAAGCAAAGGAGCTTTTGAAGAAAGGATTGGAGGAGTAA

Upstream 100 bases:

>100_bases
GTAACAAAACGGTATGAACATTGTCAGCCGAATTTTTTTATGAATTTATAAAACTTTTCCATGTAGTGTATCGTCTAATA
TATGGGAAGGAGGGAAGGCT

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTGCGAAAATCAATGGAGAACACAACTTTTAAACATTTGAGTTTTTCTGATCAGC
ACCAGAAGCGGGTGCGTGAA

Product: RNA polymerase factor sigma C

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MDELMIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE

Sequences:

>Translated_177_residues
MDELMIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE
>Mature_177_residues
MDELMIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCK
DYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSRLASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTI
KTRLKKAKELLKKGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=178, Percent_Identity=28.0898876404494, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21018; Mature: 21018

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELMIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDELMIEAFEIEDKEDLIDEIMNKYGQEVLQLVYSYVNNKEVAEDVTQDIFVKCYKSLHT
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
YKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYMESQKESVEQIVIQNAEDSR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHCCCCHHH
LASAVMSLPIKYREVIYLFYYEELSIKEIATVIEVKENTIKTRLKKAKELLKKGLEE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]