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The map label for this gene is ydfI [H]

Identifier: 118476625

GI number: 118476625

Start: 1030084

End: 1030743

Strand: Direct

Name: ydfI [H]

Synonym: BALH_0900

Alternate gene names: 118476625

Gene position: 1030084-1030743 (Clockwise)

Preceding gene: 118476624

Following gene: 118476627

Centisome position: 19.59

GC content: 30.15

Gene sequence:

>660_bases
ATGAAGGAGATAGCGATGAAGTATAACGTATTAATTGTGGATGATCATTTCGTTGTAAGAGAAGGTCTGAAATTAATAAT
AGAAACGAGTGATTCATTTCAAATTATAGGTGAGGCTGAAAATGGAGAAGAAGCCCTTTCTTTCATAGAAAAAAAGAAAC
CTGATGTTATTTTAATGGATTTAAATATGCCTAAAATGAGTGGTTTAGAAACAATTGAAGCTTTAAATAAAAAACAAAAT
CATACGCCGATTATTATATTAACTACTTATAACGAAGATGAATTAATGTTAAAGGGAATTGAGTTAGGAGCAAAAGGATA
TTTGCTAAAAGATACGGATCGTGAGAATTTGTTTCGAACATTGGAAGCGGCTATTCGAGGTGAGATTTTACTACAACCTA
ATATTATGGAAAAGATAGTGAATTATAAAAGGAAAGAAGTATATGCTGATAAGGTTGAAGAAAATAACTTAACAGAAAAA
GAATTGTTTGTGTTGAAAGCTATTGCGCGTGGAAATAAGAATAAAGAAATTGCATTCGATATGGGAATAGCTGAGCGAAC
AGTAAAAGCGTATTTAACAAATATATATAATAAATTAGGTGTTAATTCAAGGTCAGAAGCAGTAGCTGTATCTATTGAAA
GGAAGTTAATTCATTTTTAA

Upstream 100 bases:

>100_bases
ATTGGCTTAAATGAGCGAGTTCGATTGATTAATGGAGAAATACATATATTGAGTGAAAAGGTGAAGGGTACGAAAGTGTG
TATTCAAGTACCTATCAATA

Downstream 100 bases:

>100_bases
AATATTATATATGCCCAATCGTACATTATAGGCTTGCCCTTTTGTACGATTTTTTTATTATTTTCTCATGTTATGCTTTA
GAAAGTATGAGAGATTTAAG

Product: DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKEIAMKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMDLNMPKMSGLETIEALNKKQN
HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRGEILLQPNIMEKIVNYKRKEVYADKVEENNLTEK
ELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF

Sequences:

>Translated_219_residues
MKEIAMKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMDLNMPKMSGLETIEALNKKQN
HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRGEILLQPNIMEKIVNYKRKEVYADKVEENNLTEK
ELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF
>Mature_219_residues
MKEIAMKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMDLNMPKMSGLETIEALNKKQN
HTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRGEILLQPNIMEKIVNYKRKEVYADKVEENNLTEK
ELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=215, Percent_Identity=36.7441860465116, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=37.1980676328502, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1788222, Length=211, Percent_Identity=29.3838862559242, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790102, Length=194, Percent_Identity=28.3505154639175, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=23, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788712, Length=195, Percent_Identity=27.1794871794872, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI87082052, Length=120, Percent_Identity=39.1666666666667, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788550, Length=112, Percent_Identity=34.8214285714286, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786599, Length=123, Percent_Identity=30.0813008130081, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25034; Mature: 25034

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIAMKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMD
CCCEEEEEEEEEEECHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEEE
LNMPKMSGLETIEALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRT
CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEECCCCHHHHHHH
LEAAIRGEILLQPNIMEKIVNYKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFD
HHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEE
MGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCC
>Mature Secondary Structure
MKEIAMKYNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMD
CCCEEEEEEEEEEECHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHCCCCEEEEE
LNMPKMSGLETIEALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRT
CCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCEEECCCCHHHHHHH
LEAAIRGEILLQPNIMEKIVNYKRKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFD
HHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEE
MGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]