BacMap

Definition	Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession	NC_008577
Length	4,972,204

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The map label for this gene is dbpA [H]

Identifier: 117921821

GI number: 117921821

Start: 4055553

End: 4056992

Strand: Reverse

Name: dbpA [H]

Synonym: Shewana3_3384

Alternate gene names: 117921821

Gene position: 4056992-4055553 (Counterclockwise)

Preceding gene: 117921822

Following gene: 117921815

Centisome position: 81.59

GC content: 53.47

Gene sequence:

>1440_bases
ATGCCAGCGCGGGTTACCCACCACAGGATATTCGCCTTGAGCAATTCAGACACTCAGCCTTCAATGGCTTTCTCAACTCT
TAAGCTAAAACCCGAACTGCTTGAGAACCTTACCACTATGGGCTATCACGAAATGACGCCGATTCAGGCGCAGAGTCTGC
CAGCCATTTTAGCGGGCGAGGATGTGATTGGTCAGGGCAAGACGGGTTCGGGTAAAACGGCGGCCTTCGGTTTAGGTCTG
CTGAACAAGTTAGATGTGAAGCGTTTTCGCATTCAAACCTTAGTGCTGTGTCCAACCCGCGAACTGGCCGACCAAGTGGC
GCAGGAGATCCGCACACTGGCACGTGGTATCCACAACGTAAAAGTGCTTACCCTCTGTGGCGGCGTGCCCATGGGGCCGC
AAATTGGTTCGCTCGAGCATGGCGCCCACATTATCGTTGGTACGCCGGGGCGGATTGTCGATCACTTAGAGCGTAACCGT
TTAGACCTAAGTAACCTGAATATGCTCGTGCTAGACGAAGCCGACCGTATGCTGGAAATGGGCTTTCAGCCACAGCTCGA
TGCGATTATCGAGCAGTCGCCACGCGAGCGCCAAACCCTGCTGTTTAGTGCGACCTTCCCCGAGCAAATTCAGTCGATTG
CTAAGCAAATTATGTACGACCCAGTGATGGTGAAAGTGGCCGTGACCCACGAAAAGAGCACCATCGAGCAGCATTTCTAC
CACTTGGATGACGACAAGGCGCGCATGCAGGCGCTGCAATTATTGCTGCTGGATCGTAAGCCCGAGAGCGCCGTGGTGTT
TTGTAATACCAAGCGCGAAACCCAAAAAGTGGCCGATGAACTAAGTGATGCTGGCTTTAGCGTTATCGCCCTACATGGGG
ATTTAGAGCAGCGCGACCGGGATGAAACCCTGCTGCAATTTGCCAACAAGAGTGCCTGTGTGTTGGTGGCAACTGATGTG
GCCGCCCGTGGCCTCGATATCGACGCGCTGGACGCGGTGTTTAACTACCACGTGGCTTACGATACCGAAGTGCATATTCA
CCGTATTGGCCGTACCGGCCGTGCGGGCAGTAAGGGCGCGGCTTTTACCTTCTTTGACGATCAAGATGGCTACAAAATTG
CGTTATTAGAAGAGTACTTAGAGCGCGATATTCAGAGCGAAGCCTTACCATCATTAAGTTTGCTGGGCACAGCGCCCAAT
GCACCAACCATGATCACCCTGCAAATCGATGGCGGTAAAAAAGAGAAGCTTCGCCCCGGTGATATCCTCGGGGCCCTCAC
TGGGGAGAATGGCATCGAAGGCTCGCAGGTCGGCAAAATCCTTGTGACCGACTACCGCGCCTATGTGGCGGTGAATCGCA
AAGTCGCTAAAAAGGCACTGAGCAAAATCACCAGCGGCCGCATTAAAGGTAAGTCCTACCGCGCGTGGTTAATGAAATAA

Upstream 100 bases:

>100_bases
ACCGCCAGACATAAAAGCCTAAACAAATGGCTAAACGCCCCGAAGCGATAAGCGTATTTAATCAGTAACACTATGCAATT
TCAGTGACTTGCCTGAGTTT

Downstream 100 bases:

>100_bases
CCCGCAGTTAAGTGAATAAAAAGCGAAGCCAAATGGCTTCGCTTTTTGGTTTATGGCCTAGGGTTAGAAGTTATAGGTGA
CTCCCAGCATCAGGTTTCGC

Product: ATP-dependent RNA helicase DbpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 479; Mature: 478

Protein sequence:

>479_residues
MPARVTHHRIFALSNSDTQPSMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGL
LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNR
LDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFY
HLDDDKARMQALQLLLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDV
AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPN
APTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK

Sequences:

>Translated_479_residues
MPARVTHHRIFALSNSDTQPSMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGL
LNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNR
LDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFY
HLDDDKARMQALQLLLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDV
AARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPN
APTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
>Mature_478_residues
PARVTHHRIFALSNSDTQPSMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL
NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRL
DLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYH
LDDDKARMQALQLLLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVA
ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNA
PTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK

Specific function: Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome ass

COG id: COG0513

COG function: function code LKJ; Superfamily II DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI45446747, Length=448, Percent_Identity=35.4910714285714, Blast_Score=248, Evalue=8e-66,
Organism=Homo sapiens, GI45446743, Length=448, Percent_Identity=35.4910714285714, Blast_Score=248, Evalue=8e-66,
Organism=Homo sapiens, GI7661920, Length=372, Percent_Identity=35.752688172043, Blast_Score=248, Evalue=9e-66,
Organism=Homo sapiens, GI20149629, Length=356, Percent_Identity=38.7640449438202, Blast_Score=244, Evalue=2e-64,
Organism=Homo sapiens, GI301171467, Length=371, Percent_Identity=38.0053908355795, Blast_Score=239, Evalue=5e-63,
Organism=Homo sapiens, GI301171475, Length=371, Percent_Identity=38.0053908355795, Blast_Score=238, Evalue=6e-63,
Organism=Homo sapiens, GI87196351, Length=371, Percent_Identity=38.0053908355795, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI4758138, Length=357, Percent_Identity=35.5742296918768, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI148613856, Length=357, Percent_Identity=35.8543417366947, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI38201710, Length=357, Percent_Identity=35.8543417366947, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI169881239, Length=370, Percent_Identity=37.8378378378378, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI13514809, Length=370, Percent_Identity=37.8378378378378, Blast_Score=236, Evalue=5e-62,
Organism=Homo sapiens, GI41327773, Length=363, Percent_Identity=37.7410468319559, Blast_Score=233, Evalue=4e-61,
Organism=Homo sapiens, GI50659095, Length=380, Percent_Identity=37.8947368421053, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI262118318, Length=370, Percent_Identity=36.7567567567568, Blast_Score=227, Evalue=2e-59,
Organism=Homo sapiens, GI262231852, Length=371, Percent_Identity=36.6576819407008, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI216548263, Length=371, Percent_Identity=36.6576819407008, Blast_Score=226, Evalue=3e-59,
Organism=Homo sapiens, GI13518015, Length=371, Percent_Identity=36.6576819407008, Blast_Score=226, Evalue=4e-59,
Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=32.0652173913043, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI31542656, Length=372, Percent_Identity=36.0215053763441, Blast_Score=221, Evalue=1e-57,
Organism=Homo sapiens, GI222352149, Length=378, Percent_Identity=35.978835978836, Blast_Score=219, Evalue=4e-57,
Organism=Homo sapiens, GI41327771, Length=428, Percent_Identity=33.1775700934579, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI13129006, Length=377, Percent_Identity=36.8700265251989, Blast_Score=216, Evalue=5e-56,
Organism=Homo sapiens, GI21071032, Length=360, Percent_Identity=36.3888888888889, Blast_Score=215, Evalue=8e-56,
Organism=Homo sapiens, GI188035877, Length=361, Percent_Identity=34.9030470914127, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI4758112, Length=359, Percent_Identity=33.7047353760446, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI18375623, Length=359, Percent_Identity=33.7047353760446, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI21040371, Length=360, Percent_Identity=33.3333333333333, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI224593278, Length=351, Percent_Identity=35.8974358974359, Blast_Score=203, Evalue=4e-52,
Organism=Homo sapiens, GI83700235, Length=351, Percent_Identity=36.1823361823362, Blast_Score=201, Evalue=9e-52,
Organism=Homo sapiens, GI41327776, Length=356, Percent_Identity=33.9887640449438, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI4503529, Length=378, Percent_Identity=33.3333333333333, Blast_Score=196, Evalue=3e-50,
Organism=Homo sapiens, GI51094101, Length=354, Percent_Identity=33.8983050847458, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI13514831, Length=357, Percent_Identity=35.8543417366947, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI164419743, Length=354, Percent_Identity=33.8983050847458, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI8922886, Length=387, Percent_Identity=32.2997416020672, Blast_Score=189, Evalue=7e-48,
Organism=Homo sapiens, GI6005743, Length=387, Percent_Identity=32.2997416020672, Blast_Score=188, Evalue=9e-48,
Organism=Homo sapiens, GI55749865, Length=378, Percent_Identity=30.952380952381, Blast_Score=188, Evalue=1e-47,
Organism=Homo sapiens, GI256223453, Length=415, Percent_Identity=29.3975903614458, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI41327779, Length=369, Percent_Identity=31.1653116531165, Blast_Score=179, Evalue=7e-45,
Organism=Homo sapiens, GI38327634, Length=331, Percent_Identity=35.3474320241692, Blast_Score=176, Evalue=5e-44,
Organism=Homo sapiens, GI164419732, Length=377, Percent_Identity=32.8912466843501, Blast_Score=175, Evalue=9e-44,
Organism=Homo sapiens, GI62241022, Length=362, Percent_Identity=32.0441988950276, Blast_Score=172, Evalue=5e-43,
Organism=Homo sapiens, GI38569503, Length=380, Percent_Identity=30.5263157894737, Blast_Score=169, Evalue=6e-42,
Organism=Homo sapiens, GI38569505, Length=380, Percent_Identity=30.5263157894737, Blast_Score=168, Evalue=1e-41,
Organism=Homo sapiens, GI62241024, Length=340, Percent_Identity=31.7647058823529, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI9506931, Length=400, Percent_Identity=29, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI17505907, Length=402, Percent_Identity=29.1044776119403, Blast_Score=159, Evalue=6e-39,
Organism=Homo sapiens, GI9966805, Length=322, Percent_Identity=32.6086956521739, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI4826686, Length=331, Percent_Identity=28.3987915407855, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI20336298, Length=217, Percent_Identity=35.0230414746544, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI256773275, Length=410, Percent_Identity=27.3170731707317, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI154759257, Length=410, Percent_Identity=25.3658536585366, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI1787605, Length=458, Percent_Identity=53.7117903930131, Blast_Score=481, Evalue=1e-137,
Organism=Escherichia coli, GI87082221, Length=374, Percent_Identity=41.9786096256684, Blast_Score=282, Evalue=3e-77,
Organism=Escherichia coli, GI1787016, Length=388, Percent_Identity=36.5979381443299, Blast_Score=254, Evalue=6e-69,
Organism=Escherichia coli, GI1790214, Length=372, Percent_Identity=36.0215053763441, Blast_Score=222, Evalue=4e-59,
Organism=Escherichia coli, GI1788930, Length=350, Percent_Identity=35.7142857142857, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI48994977, Length=410, Percent_Identity=23.4146341463415, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71995724, Length=366, Percent_Identity=37.9781420765027, Blast_Score=257, Evalue=7e-69,
Organism=Caenorhabditis elegans, GI17507121, Length=366, Percent_Identity=37.9781420765027, Blast_Score=257, Evalue=9e-69,
Organism=Caenorhabditis elegans, GI71987143, Length=371, Percent_Identity=35.3099730458221, Blast_Score=254, Evalue=6e-68,
Organism=Caenorhabditis elegans, GI17555296, Length=349, Percent_Identity=39.2550143266476, Blast_Score=237, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI17552642, Length=384, Percent_Identity=36.71875, Blast_Score=236, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI71995718, Length=374, Percent_Identity=38.5026737967914, Blast_Score=232, Evalue=4e-61,
Organism=Caenorhabditis elegans, GI115533224, Length=380, Percent_Identity=36.8421052631579, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17510307, Length=369, Percent_Identity=36.5853658536585, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI17510309, Length=369, Percent_Identity=36.5853658536585, Blast_Score=228, Evalue=7e-60,
Organism=Caenorhabditis elegans, GI86570094, Length=359, Percent_Identity=38.1615598885794, Blast_Score=227, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI71995514, Length=369, Percent_Identity=36.5853658536585, Blast_Score=227, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI17507877, Length=376, Percent_Identity=36.1702127659575, Blast_Score=210, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17552114, Length=385, Percent_Identity=30.1298701298701, Blast_Score=210, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI32565321, Length=410, Percent_Identity=33.1707317073171, Blast_Score=209, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI71999646, Length=369, Percent_Identity=34.4173441734417, Blast_Score=208, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI71999644, Length=395, Percent_Identity=32.6582278481013, Blast_Score=206, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI115532548, Length=411, Percent_Identity=33.3333333333333, Blast_Score=205, Evalue=3e-53,
Organism=Caenorhabditis elegans, GI115532546, Length=365, Percent_Identity=35.0684931506849, Blast_Score=205, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17507879, Length=384, Percent_Identity=36.4583333333333, Blast_Score=205, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI17507945, Length=364, Percent_Identity=35.1648351648352, Blast_Score=202, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI17510559, Length=382, Percent_Identity=33.7696335078534, Blast_Score=197, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI71982858, Length=356, Percent_Identity=30.8988764044944, Blast_Score=197, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17507881, Length=383, Percent_Identity=33.6814621409922, Blast_Score=196, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17509811, Length=350, Percent_Identity=33.4285714285714, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17505370, Length=348, Percent_Identity=33.6206896551724, Blast_Score=184, Evalue=8e-47,
Organism=Caenorhabditis elegans, GI17553716, Length=367, Percent_Identity=29.700272479564, Blast_Score=182, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17536099, Length=388, Percent_Identity=31.4432989690722, Blast_Score=181, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI17536101, Length=388, Percent_Identity=31.4432989690722, Blast_Score=181, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17537549, Length=363, Percent_Identity=31.9559228650138, Blast_Score=181, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI17536103, Length=388, Percent_Identity=31.701030927835, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI193206561, Length=361, Percent_Identity=29.6398891966759, Blast_Score=178, Evalue=6e-45,
Organism=Caenorhabditis elegans, GI193208216, Length=406, Percent_Identity=30.7881773399015, Blast_Score=162, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17508543, Length=386, Percent_Identity=31.0880829015544, Blast_Score=161, Evalue=8e-40,
Organism=Caenorhabditis elegans, GI71990816, Length=382, Percent_Identity=33.7696335078534, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17507641, Length=387, Percent_Identity=30.749354005168, Blast_Score=142, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17556951, Length=396, Percent_Identity=27.5252525252525, Blast_Score=141, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI32564046, Length=374, Percent_Identity=30.2139037433155, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71982862, Length=202, Percent_Identity=31.6831683168317, Blast_Score=124, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI71997889, Length=395, Percent_Identity=27.5949367088608, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25148291, Length=349, Percent_Identity=27.2206303724928, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25148203, Length=398, Percent_Identity=22.8643216080402, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71987152, Length=105, Percent_Identity=38.0952380952381, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI25148205, Length=316, Percent_Identity=22.7848101265823, Blast_Score=83, Evalue=3e-16,
Organism=Saccharomyces cerevisiae, GI6320224, Length=365, Percent_Identity=34.2465753424658, Blast_Score=244, Evalue=3e-65,
Organism=Saccharomyces cerevisiae, GI6324217, Length=363, Percent_Identity=35.8126721763085, Blast_Score=241, Evalue=2e-64,
Organism=Saccharomyces cerevisiae, GI6321856, Length=405, Percent_Identity=36.2962962962963, Blast_Score=240, Evalue=3e-64,
Organism=Saccharomyces cerevisiae, GI6325138, Length=383, Percent_Identity=37.3368146214099, Blast_Score=238, Evalue=2e-63,
Organism=Saccharomyces cerevisiae, GI6321360, Length=363, Percent_Identity=38.2920110192837, Blast_Score=234, Evalue=3e-62,
Organism=Saccharomyces cerevisiae, GI6324778, Length=382, Percent_Identity=36.6492146596859, Blast_Score=231, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6320041, Length=369, Percent_Identity=31.9783197831978, Blast_Score=223, Evalue=5e-59,
Organism=Saccharomyces cerevisiae, GI6323021, Length=351, Percent_Identity=35.8974358974359, Blast_Score=208, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6322912, Length=371, Percent_Identity=33.9622641509434, Blast_Score=201, Evalue=2e-52,
Organism=Saccharomyces cerevisiae, GI6322323, Length=371, Percent_Identity=33.9622641509434, Blast_Score=201, Evalue=2e-52,
Organism=Saccharomyces cerevisiae, GI6323947, Length=346, Percent_Identity=36.4161849710983, Blast_Score=201, Evalue=3e-52,
Organism=Saccharomyces cerevisiae, GI6320449, Length=376, Percent_Identity=32.4468085106383, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6320119, Length=350, Percent_Identity=30, Blast_Score=186, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6321963, Length=375, Percent_Identity=33.6, Blast_Score=185, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6324620, Length=393, Percent_Identity=31.0432569974555, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6319714, Length=380, Percent_Identity=29.4736842105263, Blast_Score=182, Evalue=1e-46,
Organism=Saccharomyces cerevisiae, GI6322427, Length=365, Percent_Identity=34.7945205479452, Blast_Score=180, Evalue=5e-46,
Organism=Saccharomyces cerevisiae, GI6321111, Length=379, Percent_Identity=30.6068601583113, Blast_Score=169, Evalue=1e-42,
Organism=Saccharomyces cerevisiae, GI6319618, Length=405, Percent_Identity=29.8765432098765, Blast_Score=164, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6321267, Length=366, Percent_Identity=32.2404371584699, Blast_Score=157, Evalue=2e-39,
Organism=Saccharomyces cerevisiae, GI6320400, Length=476, Percent_Identity=27.9411764705882, Blast_Score=148, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6320173, Length=207, Percent_Identity=39.6135265700483, Blast_Score=147, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6323306, Length=411, Percent_Identity=23.3576642335766, Blast_Score=113, Evalue=7e-26,
Organism=Saccharomyces cerevisiae, GI6324366, Length=423, Percent_Identity=24.3498817966903, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6322876, Length=182, Percent_Identity=32.967032967033, Blast_Score=87, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24662330, Length=361, Percent_Identity=39.612188365651, Blast_Score=254, Evalue=1e-67,
Organism=Drosophila melanogaster, GI24645031, Length=374, Percent_Identity=36.3636363636364, Blast_Score=253, Evalue=3e-67,
Organism=Drosophila melanogaster, GI24642151, Length=359, Percent_Identity=38.9972144846797, Blast_Score=249, Evalue=3e-66,
Organism=Drosophila melanogaster, GI21355075, Length=396, Percent_Identity=34.3434343434343, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI28574962, Length=379, Percent_Identity=35.0923482849604, Blast_Score=234, Evalue=8e-62,
Organism=Drosophila melanogaster, GI24584399, Length=365, Percent_Identity=37.2602739726027, Blast_Score=234, Evalue=1e-61,
Organism=Drosophila melanogaster, GI24585582, Length=354, Percent_Identity=38.4180790960452, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI24644483, Length=388, Percent_Identity=34.5360824742268, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI281361218, Length=388, Percent_Identity=34.5360824742268, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24644481, Length=388, Percent_Identity=34.5360824742268, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24644487, Length=389, Percent_Identity=34.4473007712082, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI45551833, Length=389, Percent_Identity=34.4473007712082, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24644485, Length=389, Percent_Identity=34.4473007712082, Blast_Score=229, Evalue=3e-60,
Organism=Drosophila melanogaster, GI24644479, Length=389, Percent_Identity=34.4473007712082, Blast_Score=229, Evalue=4e-60,
Organism=Drosophila melanogaster, GI17985987, Length=373, Percent_Identity=36.4611260053619, Blast_Score=224, Evalue=1e-58,
Organism=Drosophila melanogaster, GI18857967, Length=436, Percent_Identity=32.7981651376147, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI24582080, Length=371, Percent_Identity=35.0404312668464, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24582078, Length=371, Percent_Identity=35.0404312668464, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI17136248, Length=371, Percent_Identity=35.0404312668464, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI24582075, Length=371, Percent_Identity=35.0404312668464, Blast_Score=214, Evalue=1e-55,
Organism=Drosophila melanogaster, GI28575014, Length=382, Percent_Identity=35.6020942408377, Blast_Score=213, Evalue=2e-55,
Organism=Drosophila melanogaster, GI24583281, Length=364, Percent_Identity=30.7692307692308, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI24583279, Length=364, Percent_Identity=30.7692307692308, Blast_Score=211, Evalue=8e-55,
Organism=Drosophila melanogaster, GI17977678, Length=373, Percent_Identity=33.2439678284182, Blast_Score=206, Evalue=4e-53,
Organism=Drosophila melanogaster, GI17136814, Length=351, Percent_Identity=36.4672364672365, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24584994, Length=385, Percent_Identity=32.2077922077922, Blast_Score=201, Evalue=6e-52,
Organism=Drosophila melanogaster, GI21356161, Length=388, Percent_Identity=33.7628865979381, Blast_Score=201, Evalue=6e-52,
Organism=Drosophila melanogaster, GI24581954, Length=376, Percent_Identity=32.4468085106383, Blast_Score=196, Evalue=3e-50,
Organism=Drosophila melanogaster, GI24581952, Length=376, Percent_Identity=32.4468085106383, Blast_Score=196, Evalue=3e-50,
Organism=Drosophila melanogaster, GI24581956, Length=376, Percent_Identity=32.4468085106383, Blast_Score=196, Evalue=3e-50,
Organism=Drosophila melanogaster, GI281365720, Length=318, Percent_Identity=34.9056603773585, Blast_Score=192, Evalue=4e-49,
Organism=Drosophila melanogaster, GI28571808, Length=352, Percent_Identity=34.6590909090909, Blast_Score=186, Evalue=3e-47,
Organism=Drosophila melanogaster, GI28571809, Length=352, Percent_Identity=34.6590909090909, Blast_Score=186, Evalue=3e-47,
Organism=Drosophila melanogaster, GI28571338, Length=443, Percent_Identity=30.0225733634311, Blast_Score=170, Evalue=2e-42,
Organism=Drosophila melanogaster, GI18859659, Length=443, Percent_Identity=30.0225733634311, Blast_Score=170, Evalue=3e-42,
Organism=Drosophila melanogaster, GI24666101, Length=370, Percent_Identity=32.972972972973, Blast_Score=166, Evalue=3e-41,
Organism=Drosophila melanogaster, GI24642822, Length=390, Percent_Identity=30.7692307692308, Blast_Score=165, Evalue=5e-41,
Organism=Drosophila melanogaster, GI17647335, Length=364, Percent_Identity=30.7692307692308, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI21355559, Length=368, Percent_Identity=31.25, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24643725, Length=393, Percent_Identity=26.2086513994911, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI24668515, Length=329, Percent_Identity=29.483282674772, Blast_Score=128, Evalue=1e-29,
Organism=Drosophila melanogaster, GI19920478, Length=362, Percent_Identity=29.8342541436464, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI20130173, Length=347, Percent_Identity=29.971181556196, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24640164, Length=354, Percent_Identity=20.9039548022599, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005580
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR000629
- InterPro:   IPR014014 [H]

Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]

EC number: =3.6.4.13 [H]

Molecular weight: Translated: 52785; Mature: 52654

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00039 DEAD_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARVTHHRIFALSNSDTQPSMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGE
CCCCEEEEEEEEECCCCCCCCHHHEEEEECHHHHHHHHHCCCCCCCCCCHHCCCEEEECC
DVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCE
KVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEM
EEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHC
GFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFY
CCCCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHC
HLDDDKARMQALQLLLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDR
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHCCH
DETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGA
HHHHHHHCCCCEEEEEEECHHHCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCC
AFTFFDDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPG
EEEEEECCCCCEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCC
DILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
CEEEEECCCCCCCHHHCCEEEEECCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECC
>Mature Secondary Structure 
PARVTHHRIFALSNSDTQPSMAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGE
CCCEEEEEEEEECCCCCCCCHHHEEEEECHHHHHHHHHCCCCCCCCCCHHCCCEEEECC
DVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCE
KVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEM
EEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHC
GFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFY
CCCCCHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHC
HLDDDKARMQALQLLLLDRKPESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDR
CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHCCH
DETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGA
HHHHHHHCCCCEEEEEEECHHHCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCC
AFTFFDDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPG
EEEEEECCCCCEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCC
DILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
CEEEEECCCCCCCHHHCCEEEEECCEEEEEHHHHHHHHHHHHHHCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2216714; 8253085; 9097039; 9278503; 9016593; 11350034 [H]