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The map label for this gene is glpD [H]

Identifier: 117921748

GI number: 117921748

Start: 3972415

End: 3973605

Strand: Reverse

Name: glpD [H]

Synonym: Shewana3_3310

Alternate gene names: 117921748

Gene position: 3973605-3972415 (Counterclockwise)

Preceding gene: 117921749

Following gene: 117921747

Centisome position: 79.92

GC content: 50.97

Gene sequence:

>1191_bases
ATGGATAAAGCCGATATGAGTTCATACGATATTGCGATTATCGGTGGTGGGATCAGCGGTGTCGGTATCGCCCAATACGC
AGCGGCGGCGGGGTATTCGACCCTGCTTATCGAAAAAGGTGAGATTGGCGGCCAAACCTCGGCCAATTCCAGCAAGTTGA
TCCACGGTGGGTTGCGATATCTTGAAAGCGGGCAAGTGAACCTTGTGCGCAAATCCTTGCAGGAGCGGCGCCATTTGCTC
GACTTCGCGCCAAGCTTAGTCAAAGCCGTACCTTTTTACATTCCCGTCTATCAAGACAGTCAGCGTAACCCTTGGACGAT
TCGGGCGGGCTTGAGTCTGTACGCGCTACTCAGTGAATTTGATCCGCTTGGCCGCTTTGTATCTATTCCCGCCGTGCATT
GGCATCGTTTTAACGGGCTTAAACTCCAAGGTTTGAAGGCCGTGTTCCAGTATTGGGACGCGCAAACCGACGATAAATTG
CTGACCCAAGCGGTGGCCCGTAGTGCCGAGGCATTGGGCGCCCATGTGTATGCCGAGGCGGAGTTTTTACAGCTCAATCA
TCTGAGTGAGCAGATTGACCTAAGTTTTCGCCTTCGCGGCGAAGTGCAACAGATTGACGCTAAGCTGGTGATAAATGCCG
CCGGTCCTTGGGTGAATGAGGTGATAGCAAAGGTGTCACCGCCACTGGCTGGAGTTGAACTGGATTGGGTGCAGGGCGCA
CATTTGCTGCTGGACTTACCCGCCCCCGACGGCATCTTATATTTAGAATCTTGCTTCGATAAGCGGGTGATTTTTGTGAT
GCCTTGGTATGGTCAAATGCTAATTGGCACCACGGAAACCGAGTTAACATCCTTAGATTCACCGCCCCAAGTAACTGAGT
CTGAAATTAATTATCTCTTAGGCATTTATCGGCACTACTTTCCACTGTCGGCCTCGATTGATGAACTCAAAACCAAGATA
GTGCAGACCTTTTGCGGCGTGAGGGTATTACCTAAGCAAGCGAGCTCTGCCTTTGAGCGCCCAAGGGATACCCTAATGCA
AACCTCGATTTCTCACCCGAGATTACTGAGTCTTTACGGCGGCAAGCTCACAACTTTTAGGAGTACCTCGGCCGAAGTGC
TTGAGTGGGTTGAACAAAAACTCGGAAAACGCACTCCCATCGCCGATATAGATAGCCTGAGATTAAGTTAA

Upstream 100 bases:

>100_bases
AAGCCTTAAAGCAATTGCACGCCAGTATCGAATAGTGTGAAAGCCAATCTGTGATAGCAAGGGAGTGGAGCATGGATAAA
CGCAGCATCAAGGCGTCGGG

Downstream 100 bases:

>100_bases
TCTGAGCCGGACTATCGGCCAATGCTGCACTTCAAGGTGATTTTTCTGCGCAAAAACGCTAAAGTGTGGCGCTTTTTGAC
TGGGGCCTTAATGTGTTTGT

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDKADMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKAVPFYIPVYQDSQRNPWTIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQAVARSAEALGAHVYAEAEFLQLNHLSEQIDLSFRLRGEVQQIDAKLVINAAGPWVNEVIAKVSPPLAGVELDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQMLIGTTETELTSLDSPPQVTESEINYLLGIYRHYFPLSASIDELKTKI
VQTFCGVRVLPKQASSAFERPRDTLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWVEQKLGKRTPIADIDSLRLS

Sequences:

>Translated_396_residues
MDKADMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKAVPFYIPVYQDSQRNPWTIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQAVARSAEALGAHVYAEAEFLQLNHLSEQIDLSFRLRGEVQQIDAKLVINAAGPWVNEVIAKVSPPLAGVELDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQMLIGTTETELTSLDSPPQVTESEINYLLGIYRHYFPLSASIDELKTKI
VQTFCGVRVLPKQASSAFERPRDTLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWVEQKLGKRTPIADIDSLRLS
>Mature_396_residues
MDKADMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRYLESGQVNLVRKSLQERRHLL
DFAPSLVKAVPFYIPVYQDSQRNPWTIRAGLSLYALLSEFDPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKL
LTQAVARSAEALGAHVYAEAEFLQLNHLSEQIDLSFRLRGEVQQIDAKLVINAAGPWVNEVIAKVSPPLAGVELDWVQGA
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQMLIGTTETELTSLDSPPQVTESEINYLLGIYRHYFPLSASIDELKTKI
VQTFCGVRVLPKQASSAFERPRDTLMQTSISHPRLLSLYGGKLTTFRSTSAEVLEWVEQKLGKRTPIADIDSLRLS

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=399, Percent_Identity=29.5739348370927, Blast_Score=152, Evalue=6e-37,
Organism=Homo sapiens, GI285002231, Length=399, Percent_Identity=29.5739348370927, Blast_Score=152, Evalue=6e-37,
Organism=Escherichia coli, GI2367226, Length=358, Percent_Identity=33.5195530726257, Blast_Score=150, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17509253, Length=397, Percent_Identity=28.7153652392947, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI115534726, Length=372, Percent_Identity=28.494623655914, Blast_Score=119, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6322036, Length=407, Percent_Identity=28.2555282555283, Blast_Score=123, Evalue=5e-29,
Organism=Drosophila melanogaster, GI161077125, Length=390, Percent_Identity=28.7179487179487, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24653942, Length=390, Percent_Identity=28.7179487179487, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24653944, Length=390, Percent_Identity=28.7179487179487, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI20130025, Length=390, Percent_Identity=28.7179487179487, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24586295, Length=394, Percent_Identity=28.9340101522843, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI19921278, Length=385, Percent_Identity=22.8571428571429, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 43876; Mature: 43876

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKADMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRY
CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
LESGQVNLVRKSLQERRHLLDFAPSLVKAVPFYIPVYQDSQRNPWTIRAGLSLYALLSEF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCHHHHHHHHHC
DPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKLLTQAVARSAEALGAHVYAEA
CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEHH
EFLQLNHLSEQIDLSFRLRGEVQQIDAKLVINAAGPWVNEVIAKVSPPLAGVELDWVQGA
HHHHHHHHHHHHCEEEEECCCHHHCCEEEEEECCCCHHHHHHHHCCCCCCCCEECCCCCC
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQMLIGTTETELTSLDSPPQVTESEINYLL
EEEEECCCCCCEEEEEHHHCCCEEEEECCCCCEEEECCHHHHHCCCCCCCCCHHHHHHHH
GIYRHYFPLSASIDELKTKIVQTFCGVRVLPKQASSAFERPRDTLMQTSISHPRLLSLYG
HHHHHHCCCCCCHHHHHHHHHHHHHCCEECCHHHHHHHHCHHHHHHHHCCCCCEEEEECC
GKLTTFRSTSAEVLEWVEQKLGKRTPIADIDSLRLS
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDKADMSSYDIAIIGGGISGVGIAQYAAAAGYSTLLIEKGEIGGQTSANSSKLIHGGLRY
CCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
LESGQVNLVRKSLQERRHLLDFAPSLVKAVPFYIPVYQDSQRNPWTIRAGLSLYALLSEF
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEECCHHHHHHHHHC
DPLGRFVSIPAVHWHRFNGLKLQGLKAVFQYWDAQTDDKLLTQAVARSAEALGAHVYAEA
CCCCCEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEHH
EFLQLNHLSEQIDLSFRLRGEVQQIDAKLVINAAGPWVNEVIAKVSPPLAGVELDWVQGA
HHHHHHHHHHHHCEEEEECCCHHHCCEEEEEECCCCHHHHHHHHCCCCCCCCEECCCCCC
HLLLDLPAPDGILYLESCFDKRVIFVMPWYGQMLIGTTETELTSLDSPPQVTESEINYLL
EEEEECCCCCCEEEEEHHHCCCEEEEECCCCCEEEECCHHHHHCCCCCCCCCHHHHHHHH
GIYRHYFPLSASIDELKTKIVQTFCGVRVLPKQASSAFERPRDTLMQTSISHPRLLSLYG
HHHHHHCCCCCCHHHHHHHHHHHHHCCEECCHHHHHHHHCHHHHHHHHCCCCCEEEEECC
GKLTTFRSTSAEVLEWVEQKLGKRTPIADIDSLRLS
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]