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The map label for this gene is rdxB [H]

Identifier: 117921666

GI number: 117921666

Start: 3871232

End: 3872665

Strand: Direct

Name: rdxB [H]

Synonym: Shewana3_3228

Alternate gene names: 117921666

Gene position: 3871232-3872665 (Clockwise)

Preceding gene: 117921665

Following gene: 117921667

Centisome position: 77.86

GC content: 49.16

Gene sequence:

>1434_bases
ATGCCCAAGAGTGACCCCCTACAGAGTGAGAACGCCAAGCGCTCCTCTGCCGAGCAATTTATCCCCGTAAAAAATATCCA
GGCGGACGATAAGCCTGCACATAAAAGCAGTGGCCAGATTCATTTCCGTGAACAGAAGGGCTATTTTCAACGCCTGAGAA
CCACAATGAATAGCCTATTAGTACTGCTGTTTTTTGCCCTACCCTTTATTTCCTTTGATGGTCGGCAAGCGATATTGCTG
GATGTGAGTCAGCAACAGTTCTTCTTTTTTGGCCTCACGCTCTGGCCACAGGATTTCACCTTACTCGCTTGGGTCTTTAT
TGCCGCCGCCTTTGGATTGTTTTTCATCACAGTGTTTTGGGGGCGCGTCTGGTGTGGCTATCTTTGCCCGCAAACCGCGT
GGACTTTTATGTTTGTCTGGCTCGAGAGCCGGATTGAGGGCAACAGCAACAAACGTAAATTGCTCGATAAGGCGCCATGG
TCAGCCAATAAACTCGGTAAAAGAAGTCTCAAACACGGTCTGTGGGGATTAGCCGCCTTAATTACTGGCTGTGGATTTAT
CGGTTATTTCATCCCCGCCCGCGAACTCTATTTGGATATTTTTACCGGCAACGCCGGCTTTTGGACGACCTGCTGGGTAT
GGTTTTTCGCGATTTGTACTTACTTAAATGCAGGCTGGATGCGCGAGCAAATGTGCTTACACTGCTGCCCCTATGCGCGT
TTTCAGGCAGTGATGTTCGATGCCAACACCAAAACTGTGACCTATGATGCCGCACGCGGCGAAGCGCGCGGCCCACGTAA
GCGTAAACAACCGACTGAACTCGGTGATTGTGTTGACTGTAACTTATGTGTCGAAGTCTGCCCGACGGGGATTGATATTC
GCCAAGGCCTCCAATACGAGTGTATTAACTGCGGCGCCTGTGTCGATGCCTGTAATGAAACCATGCAAAAATTCGACTAC
AAACAAAACCTAATTAGCTATGTCAGCGAGAGTGAATTAAAGGGCATCGCTCATTCCAACTGGCGCTCGCCACGCTTTTT
AGGTTACGGCGCCGCCGTTGTCATTATGTTGGTTGTGATAGGTTTAGATCTCTCCAGCCGCAGTGAGATTCAACTTAACG
TCATTCGCGACAGGCAGAGCCTATACCGCGAAACCGCCGATAATAAAGTTGAAAATACCTACCAGCTGAAGATCCGTAAC
AAGACTCAGCAAACCAAGCAATATCAACTCGCGGTCAACAGCGAAATGCCCTTCAGCTTAATTGCCGATCCTGTCATTAC
CCTCGCTCCGGGCGAGCAATCGGATTATCCCGTGACTGTATTAGCTGATAAGGATGCAATCCCAGCGGGGCGCAAAATTA
TCGAATTCTCGGTAACGGATGTCAGCAAACCTGAACAAAGCGTTAGCCAAGAAACCGGCTTCTTTAGCCCTTAG

Upstream 100 bases:

>100_bases
TTTAATTTAACCATTAAATATCAATACGTTAAAACAAAAAACTCTTGGCCTAACGCTTGCTATAGGGAGCCGAATCTTAT
TTAAGCCGTTAGGACAGCAT

Downstream 100 bases:

>100_bases
CGTAATGCGCTAGTGTGCTAGTGTGCTAGTGTGCTAGTGTGCTAGTGTGCTAGTGTGCTAGTGTGCTAGTGTGCTCGCCG
ATAAACGAACACACTGCATG

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MPKSDPLQSENAKRSSAEQFIPVKNIQADDKPAHKSSGQIHFREQKGYFQRLRTTMNSLLVLLFFALPFISFDGRQAILL
DVSQQQFFFFGLTLWPQDFTLLAWVFIAAAFGLFFITVFWGRVWCGYLCPQTAWTFMFVWLESRIEGNSNKRKLLDKAPW
SANKLGKRSLKHGLWGLAALITGCGFIGYFIPARELYLDIFTGNAGFWTTCWVWFFAICTYLNAGWMREQMCLHCCPYAR
FQAVMFDANTKTVTYDAARGEARGPRKRKQPTELGDCVDCNLCVEVCPTGIDIRQGLQYECINCGACVDACNETMQKFDY
KQNLISYVSESELKGIAHSNWRSPRFLGYGAAVVIMLVVIGLDLSSRSEIQLNVIRDRQSLYRETADNKVENTYQLKIRN
KTQQTKQYQLAVNSEMPFSLIADPVITLAPGEQSDYPVTVLADKDAIPAGRKIIEFSVTDVSKPEQSVSQETGFFSP

Sequences:

>Translated_477_residues
MPKSDPLQSENAKRSSAEQFIPVKNIQADDKPAHKSSGQIHFREQKGYFQRLRTTMNSLLVLLFFALPFISFDGRQAILL
DVSQQQFFFFGLTLWPQDFTLLAWVFIAAAFGLFFITVFWGRVWCGYLCPQTAWTFMFVWLESRIEGNSNKRKLLDKAPW
SANKLGKRSLKHGLWGLAALITGCGFIGYFIPARELYLDIFTGNAGFWTTCWVWFFAICTYLNAGWMREQMCLHCCPYAR
FQAVMFDANTKTVTYDAARGEARGPRKRKQPTELGDCVDCNLCVEVCPTGIDIRQGLQYECINCGACVDACNETMQKFDY
KQNLISYVSESELKGIAHSNWRSPRFLGYGAAVVIMLVVIGLDLSSRSEIQLNVIRDRQSLYRETADNKVENTYQLKIRN
KTQQTKQYQLAVNSEMPFSLIADPVITLAPGEQSDYPVTVLADKDAIPAGRKIIEFSVTDVSKPEQSVSQETGFFSP
>Mature_476_residues
PKSDPLQSENAKRSSAEQFIPVKNIQADDKPAHKSSGQIHFREQKGYFQRLRTTMNSLLVLLFFALPFISFDGRQAILLD
VSQQQFFFFGLTLWPQDFTLLAWVFIAAAFGLFFITVFWGRVWCGYLCPQTAWTFMFVWLESRIEGNSNKRKLLDKAPWS
ANKLGKRSLKHGLWGLAALITGCGFIGYFIPARELYLDIFTGNAGFWTTCWVWFFAICTYLNAGWMREQMCLHCCPYARF
QAVMFDANTKTVTYDAARGEARGPRKRKQPTELGDCVDCNLCVEVCPTGIDIRQGLQYECINCGACVDACNETMQKFDYK
QNLISYVSESELKGIAHSNWRSPRFLGYGAAVVIMLVVIGLDLSSRSEIQLNVIRDRQSLYRETADNKVENTYQLKIRNK
TQQTKQYQLAVNSEMPFSLIADPVITLAPGEQSDYPVTVLADKDAIPAGRKIIEFSVTDVSKPEQSVSQETGFFSP

Specific function: Involved in a membrane generated redox signal; required to maintain repression of photosynthesis gene expression in the presence of oxygen [H]

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014116
- InterPro:   IPR013783 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54173; Mature: 54042

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKSDPLQSENAKRSSAEQFIPVKNIQADDKPAHKSSGQIHFREQKGYFQRLRTTMNSLL
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
VLLFFALPFISFDGRQAILLDVSQQQFFFFGLTLWPQDFTLLAWVFIAAAFGLFFITVFW
HHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GRVWCGYLCPQTAWTFMFVWLESRIEGNSNKRKLLDKAPWSANKLGKRSLKHGLWGLAAL
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ITGCGFIGYFIPARELYLDIFTGNAGFWTTCWVWFFAICTYLNAGWMREQMCLHCCPYAR
HHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
FQAVMFDANTKTVTYDAARGEARGPRKRKQPTELGDCVDCNLCVEVCPTGIDIRQGLQYE
HEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCEE
CINCGACVDACNETMQKFDYKQNLISYVSESELKGIAHSNWRSPRFLGYGAAVVIMLVVI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHH
GLDLSSRSEIQLNVIRDRQSLYRETADNKVENTYQLKIRNKTQQTKQYQLAVNSEMPFSL
HCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHEEEEEECCCCCHHH
IADPVITLAPGEQSDYPVTVLADKDAIPAGRKIIEFSVTDVSKPEQSVSQETGFFSP
HCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure 
PKSDPLQSENAKRSSAEQFIPVKNIQADDKPAHKSSGQIHFREQKGYFQRLRTTMNSLL
CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHH
VLLFFALPFISFDGRQAILLDVSQQQFFFFGLTLWPQDFTLLAWVFIAAAFGLFFITVFW
HHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
GRVWCGYLCPQTAWTFMFVWLESRIEGNSNKRKLLDKAPWSANKLGKRSLKHGLWGLAAL
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
ITGCGFIGYFIPARELYLDIFTGNAGFWTTCWVWFFAICTYLNAGWMREQMCLHCCPYAR
HHHHHHHHHHHHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
FQAVMFDANTKTVTYDAARGEARGPRKRKQPTELGDCVDCNLCVEVCPTGIDIRQGLQYE
HEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHCCCCEE
CINCGACVDACNETMQKFDYKQNLISYVSESELKGIAHSNWRSPRFLGYGAAVVIMLVVI
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHH
GLDLSSRSEIQLNVIRDRQSLYRETADNKVENTYQLKIRNKTQQTKQYQLAVNSEMPFSL
HCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHEEEEEECCCCCHHH
IADPVITLAPGEQSDYPVTVLADKDAIPAGRKIIEFSVTDVSKPEQSVSQETGFFSP
HCCCEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9068641; 7592416 [H]