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The map label for this gene is yfiO [C]

Identifier: 117921610

GI number: 117921610

Start: 3811687

End: 3812535

Strand: Direct

Name: yfiO [C]

Synonym: Shewana3_3172

Alternate gene names: 117921610

Gene position: 3811687-3812535 (Clockwise)

Preceding gene: 117921606

Following gene: 117921611

Centisome position: 76.66

GC content: 41.93

Gene sequence:

>849_bases
GTGCTATCTGTTACAATCGAATGCTTTCTATTTTATCGTGAAATGGAAAAATTCTTAACTACAACTTATAAAGAATTGAA
TTCAAGTATGTATAAATTCTCCAAAGGCTTAACCTTAGTCCTATTTTCGCTAGCGTTATCAGCCTGTAGCAGCAGTCCTG
AAGATAACGATATTGCCGCCAAAACCTCACCTGATGTGCTCTATTCTCAGGCAAGAACCTCCATGGAACTTGGCAATTAC
TCTAAAGCCGTCCGTTCATTGGAAGCGTTAGACTCACGCTTTCCCTTCGGACCACATAAAACTCAGGTTCAGTTAGATCT
GATTTATGCCTATTACAAAATGGACGATGTTGCCTCTGGCATTGCCAACATTGACAGATTCATCCGTTTAAACCCAACCC
ATCCCAATATCGACTATGTCTACTATATGCGTGGACTCGTCAATATGCAGGCGGACAGCTATCTGTTCCACGATATGTTG
AATATCGATAGAACCGACCGCGATCCTAAAAATGCCCAAGATGCCTTTAAGGATTTTGATCGTTTAATCAAAACCTATCC
CAACAGCAAATATGCTGCCGATGCGCAAAAACGCATGTTGTCGCTGAAAAACCGTTTAGCAAAATATTCCATTCAAGTTG
CTGAGTATTATATCAAAATGAACGCTTGGAGTGCTGCGGCCGTTCGTGCTCAATCTGTGTTGGAAACATATCCCGGCACT
CCTTCAACAGAACGTGCACTGGAGATTATGGCAGAAGCTTATGGCGAGTTAGGTCAGAACCAACTGAAGCAAAACGTGCT
CATGGTAATGCAAGCTAACTTCCCAAACAACGAAATCTTATCGAACTAA

Upstream 100 bases:

>100_bases
TGATCCAATCTCAGGCCAGTTTGTGTTGCCGAAATCTCGCTTTTTAGATTAATCTCTTGTGTCATAGGAACCGTATCCCC
ATTTTGGGGTCAAAAAATGT

Downstream 100 bases:

>100_bases
GCGTAAATGCCCCTTTATAAGGGGCATTTTTTTATCTTTTGTTCGGCGTTTCACGCCCCTTCCCTTTTAGGTTCCACAGC
GCGCCAAGTTCCTTTTCAGC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLSVTIECFLFYREMEKFLTTTYKELNSSMYKFSKGLTLVLFSLALSACSSSPEDNDIAAKTSPDVLYSQARTSMELGNY
SKAVRSLEALDSRFPFGPHKTQVQLDLIYAYYKMDDVASGIANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDML
NIDRTDRDPKNAQDAFKDFDRLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSAAAVRAQSVLETYPGT
PSTERALEIMAEAYGELGQNQLKQNVLMVMQANFPNNEILSN

Sequences:

>Translated_282_residues
MLSVTIECFLFYREMEKFLTTTYKELNSSMYKFSKGLTLVLFSLALSACSSSPEDNDIAAKTSPDVLYSQARTSMELGNY
SKAVRSLEALDSRFPFGPHKTQVQLDLIYAYYKMDDVASGIANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDML
NIDRTDRDPKNAQDAFKDFDRLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSAAAVRAQSVLETYPGT
PSTERALEIMAEAYGELGQNQLKQNVLMVMQANFPNNEILSN
>Mature_282_residues
MLSVTIECFLFYREMEKFLTTTYKELNSSMYKFSKGLTLVLFSLALSACSSSPEDNDIAAKTSPDVLYSQARTSMELGNY
SKAVRSLEALDSRFPFGPHKTQVQLDLIYAYYKMDDVASGIANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDML
NIDRTDRDPKNAQDAFKDFDRLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSAAAVRAQSVLETYPGT
PSTERALEIMAEAYGELGQNQLKQNVLMVMQANFPNNEILSN

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=235, Percent_Identity=48.5106382978723, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32221; Mature: 32221

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVTIECFLFYREMEKFLTTTYKELNSSMYKFSKGLTLVLFSLALSACSSSPEDNDIAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
KTSPDVLYSQARTSMELGNYSKAVRSLEALDSRFPFGPHKTQVQLDLIYAYYKMDDVASG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHH
IANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDMLNIDRTDRDPKNAQDAFKDFD
HHHHHHHEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSAAAVRAQSVLETYPGT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PSTERALEIMAEAYGELGQNQLKQNVLMVMQANFPNNEILSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC
>Mature Secondary Structure
MLSVTIECFLFYREMEKFLTTTYKELNSSMYKFSKGLTLVLFSLALSACSSSPEDNDIAA
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
KTSPDVLYSQARTSMELGNYSKAVRSLEALDSRFPFGPHKTQVQLDLIYAYYKMDDVASG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHH
IANIDRFIRLNPTHPNIDYVYYMRGLVNMQADSYLFHDMLNIDRTDRDPKNAQDAFKDFD
HHHHHHHEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
RLIKTYPNSKYAADAQKRMLSLKNRLAKYSIQVAEYYIKMNAWSAAAVRAQSVLETYPGT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
PSTERALEIMAEAYGELGQNQLKQNVLMVMQANFPNNEILSN
CCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]