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The map label for this gene is algU [H]

Identifier: 117921590

GI number: 117921590

Start: 3779894

End: 3780496

Strand: Reverse

Name: algU [H]

Synonym: Shewana3_3152

Alternate gene names: 117921590

Gene position: 3780496-3779894 (Counterclockwise)

Preceding gene: 117921591

Following gene: 117921589

Centisome position: 76.03

GC content: 48.42

Gene sequence:

>603_bases
ATGGCCCTGGCGATACCGCAAATGCATGCCCATGAGCATACCGATGAACAGTTAATGCAACGCTATGCCAAGGGCGATGG
CAAAGCGTTTGAGCAGCTTTATCTTAAACACAAAGGCGCTTTGTACCGTTACTTTGTGCGCCAACTCGGCGACAAACAGT
TAGCCGAAGATTTATATCAAGAAACCTGGGGACGGGTGATCCGTGCCGCCGCCAACTATGAGCCGAGCGCCAAGTTTAAT
ACTTGGCTCTATCGGATTGCCCATAATCTGTTGATTGACCATGTCAGGGCGGTTAAGCCCGTCGACTTAGTCAGCCATGA
TAATGAGGAAGGGCTAGATACCTTTGTGGGAGCAGAGCAGGAACAACCCGATGTGCATTGGCAGGAAACGCAAAAGAGTC
TGTTGCTTAAAACCTGTATAGCTCTGTTACCCCAAGTGCAGAAAGAGGCCTTTATTCTCAATATCGAAATGGGCTTTACC
GCAGCGGTGATCAGCGATATTGCTGGGGTGACACTCGAGGCGACTAAAAGCCGTATTCGTTACGCATATCAAAGCTTAAA
AGATTGTGTCAATGCTAAATGGCAGGAGGTTGGTCATGAGTAA

Upstream 100 bases:

>100_bases
CCTTTGATGTCGGAGATAAACCTTTCCCGCCCGAGGACAAACTGCATCAGCAATGAGCCAGATAATTATTTTTCAGTTAG
TTAACCATTAGGGAGCTGCC

Downstream 100 bases:

>100_bases
TTCCACTCTGTCATCGGAAGAAGAGGCAATACGTCAGGAAGTCTCGGCTTGGTATCACAAACAAGCACTGGAAATGCCGC
CAGAGAGGCTCGACCAAGAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MALAIPQMHAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEPSAKFN
TWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFT
AAVISDIAGVTLEATKSRIRYAYQSLKDCVNAKWQEVGHE

Sequences:

>Translated_200_residues
MALAIPQMHAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEPSAKFN
TWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFT
AAVISDIAGVTLEATKSRIRYAYQSLKDCVNAKWQEVGHE
>Mature_199_residues
ALAIPQMHAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYEPSAKFNT
WLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTA
AVISDIAGVTLEATKSRIRYAYQSLKDCVNAKWQEVGHE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22939; Mature: 22808

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALAIPQMHAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRAAANYEPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCCCC
EQPDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHHHH
YAYQSLKDCVNAKWQEVGHE
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALAIPQMHAHEHTDEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQ
CCCCCCHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHH
ETWGRVIRAAANYEPSAKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQ
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHCCCC
EQPDVHWQETQKSLLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHHHCCHHHHHHHHHH
YAYQSLKDCVNAKWQEVGHE
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]