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The map label for this gene is cirA [C]

Identifier: 117921559

GI number: 117921559

Start: 3744928

End: 3747591

Strand: Reverse

Name: cirA [C]

Synonym: Shewana3_3121

Alternate gene names: 117921559

Gene position: 3747591-3744928 (Counterclockwise)

Preceding gene: 117921561

Following gene: 117921558

Centisome position: 75.37

GC content: 44.48

Gene sequence:

>2664_bases
ATGCGACCATCATCCTTTAAGAAAAGTGTACTAGCTACAAACATTGCTATCCTACTCGGCAGCGCTGTTTCAATCGGAGC
TGTTGCTGCAGAGGCTGAAGCCGCCGCTGCGGCAACAGTGCCTGAAAATATTGAGAAAATTGAAGTGCGTGGTATTCGTG
CTTCAAACAAAGCCAATATCAACGAAAAACGATTTTCAAATGCGGTTGTTGATGCTGTAACGGCTGAAGATATCGGTAAA
TTCCCTGATTCTGACGTAGGTCAAGCTTTAGGCCGCGTTCCAGGTGTGACTGTTGGTCGCACATTTGGTCAAGGTAGCTC
TGTTTCTATTCGCGGTACCGATCCGTTAATGACGTTGACTACGCTGAATGGTCAAAACGTTGCATCAACAGGTTGGTATG
ATCAAATGAACGTCGACCGTTCATTCAACTACTCTATGCTGCCATCAGAACTGATTGGCGGTATGGAAGTGTATAAATCT
ACCCAAGCTAACCTCGTTGAGGGTGGTATCGGTGGTACCGTTATTGTTAAGACTCGCAAACCATTAGATATGGACGCTAA
CTCTGTATTTGCCTCTGTTAAAGGTGAATACGGTTCAGTGAACGAAGATGTTGCACCTGAGTTATCTGGCTTATATAGCT
GGAAAAACGACGACGAAACCTTCGGTGTCTTACTTGCTGGGTCATACATTGACCGTGAATATCTGCGTACTGGTACTGAA
GCGGACCTCGACTGGGGTGGCCGTTCTTCAGTTCAACCATCAAGCTTTCTGCAAGAACAAGAACGTACTGCGCTCGATGC
AACTGTGCAATTCCGTCCAACAGACAATTTAGAGTTTGGTGCTCACGTACTGTCACTCAAGCTTGGTGCTGATAGTATTG
GTGCCAACATGTATATCGAAACTGACACTAACTGGGGTGAAGGTGCTTCTCACTGTAAACAGTTTAACGCAGCGGGTGTG
TGTACTCTGAGCGTCACTCCTGAAAGTGACCCATCTAATGTGTTCTTCCAAAACTGGGCGCGTAAAGGTGAAATGACGTC
CGATACCTTTGAGTTAAATGCGGACTATAAAGGCGACGGTTTTGCTATCTCTGGTGTAGCGGGTAAAACCAAGGCTGAAG
GTGGTACTCAGATGAGTGCTAACTTTGGTTATGGTTGGTGGGGTGACAAGTTTGGTCAGGTGAAATGGGCGGGTACCGTT
GATGCAACGGGCAAGCAAATTGATATCAATGGCCGTGACATGGGATTCACCCAAGATCAACTAGACACTACAGTGGGCAC
TTCAACTTGGACTGGTATTAAAGGTCCTAACTCTGACGAAGAAACTTATCTGCAGTTAGATGTTGATTTTGATTTAGATT
TTGGTGTTATCAATAAGTTTGAAACTGGTGTGCGTTACACTCAACATGAATTTGAAAAGAGTGAATACCGTGCAATTTAC
GATCCTGCTAAGAAGAATGAGTTCAAGACTTCAGATCTTTACAGCGGCACCATGAAGTTAGGCTACGACGGTTGGACTAT
TCCTAAAGCCGATCTGGATGCAATGATCAACGCGACTGAATCTCTGGTTGACCAATTTGCTTATAGCCGTTCAGCTTACG
GCCTTATCGAAGAAGATAACTTCTCAATGTACGGTATGTTCTCATTCGATGGTGAAGGTTTCCGTGGTAACTTCGGTTTA
CGCTACATTCAAACTGACGTGACTTCTAGCGGCCATATCATCGATAACTCGCCTGCAGACATTTTAGGTGTGAACCAAGG
TTGGAGCGAAGAGATCCATAGCATCAGTGACAGCTACAGCGATGTGTTGCCAAGCTTTAACATCTCTTTCGACCTTGCGC
CTGATTTGATCTTACGTATGTCAGCAGGACAAGCAATCACTCGTCCTAACTACGATAACTTGTTCTTATCAACATCAACT
GGTTATCCAGATGATAGACGTGGTAACGAAGAGATCACCTACGGTAATCCAGGCTTAAAGCCAATGAAGTCTTCACAAGC
TGACTTAAGCCTTGAATACTACTATGGCGATGGCAACTTAGTTTCTGCGACTTACTTTATCAAAGATATCAGTAACTTCA
TTGTTGCAACTACCCAATATAATCAACAGATTGGCGTCGTGAACAATGACTTAGAAACCCCTGCCGATAATTGGACTGTA
AATAATTATGAAAACGCGGGTGGTGGTGAGATCGATGGTATCGAGTTACAGTTAAACCACGCTTTCGAAAATGGTTTCGG
TGTTAACGCCAACTATACCTACGCAGATGGTACCGCTCCTGCTGAAGTGTACACTGATAACATTGGTATGTTTACTGAGT
CCTCTAAGCACAGTGCTAACTTAGTGGGTTACTGGGAAAATGATGATTTCTCAGCTCGTGCAGCTTACAACTGGCGCTCT
GAGTACATGGTGCGTGAATACGGTAAATACTATGGTAACCGCATGCACGATGCCTTTGGTACTCTGGATGTGACTTTAGG
TTGGAACGTGACAGAAGCCATTGCTTTACGTCTTGAAATTGTTAACTTAACCGCTGAAGACGATGTGCAATATGGTGCAG
CGGGTGTAGGTACAGAAGTTAAACCTGCACTACAAGACGATTTCCCTGCATGGTCATTTAAAGGCGAAACGACCTATAAG
TTAGGTGCAAGTTTCGTATTCTAA

Upstream 100 bases:

>100_bases
AATTATTGTGTAATGTTTGCACTAGACATGACAGCGTTGTCATTCCATCGGAATGGTTATGAATACTAAAACGATAATAA
AGTTATGGAAGGGAAACGAG

Downstream 100 bases:

>100_bases
TACCTTGTTAAGTCTAAAAGCCCAGTCTCGACTGGGCTTTTTTATAGATGAGTCAAAGCCGATGAAAATCAAACGCATTG
CAATTATTGGTGGCGGTACA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; NB-Dependent Receptor Subfamily; Nb-Dependent Receptor; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Protein; NB-Dependent Receptor Subfamily Protein; NB Dependent Receptor-Related Protein; NB-Dependent Outer Membrane Receptor Protein; Outer Membrane Insertion C-Terminal Signal; Nucleoside Diphosphate Kinase; Crossover Junction Endodeoxyribonuclease RuvC; NB Dependent Receptor; NB-Dependent Receptor-Like Protein; NB Dependent Receptor For Iron Chelates; NB-Dependent Receptor Protein; 50S Ribosomal Protein L; NB-Dependent Outer Membrane Ferripyoverdine Receptor; 3-Dehydroquinate Synthase; DEAD/DEAH Box Helicase-Like; Peptidase; 1-(5-Phosphoribosyl)-5-; Argininosuccinate Synthase; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 887; Mature: 887

Protein sequence:

>887_residues
MRPSSFKKSVLATNIAILLGSAVSIGAVAAEAEAAAAATVPENIEKIEVRGIRASNKANINEKRFSNAVVDAVTAEDIGK
FPDSDVGQALGRVPGVTVGRTFGQGSSVSIRGTDPLMTLTTLNGQNVASTGWYDQMNVDRSFNYSMLPSELIGGMEVYKS
TQANLVEGGIGGTVIVKTRKPLDMDANSVFASVKGEYGSVNEDVAPELSGLYSWKNDDETFGVLLAGSYIDREYLRTGTE
ADLDWGGRSSVQPSSFLQEQERTALDATVQFRPTDNLEFGAHVLSLKLGADSIGANMYIETDTNWGEGASHCKQFNAAGV
CTLSVTPESDPSNVFFQNWARKGEMTSDTFELNADYKGDGFAISGVAGKTKAEGGTQMSANFGYGWWGDKFGQVKWAGTV
DATGKQIDINGRDMGFTQDQLDTTVGTSTWTGIKGPNSDEETYLQLDVDFDLDFGVINKFETGVRYTQHEFEKSEYRAIY
DPAKKNEFKTSDLYSGTMKLGYDGWTIPKADLDAMINATESLVDQFAYSRSAYGLIEEDNFSMYGMFSFDGEGFRGNFGL
RYIQTDVTSSGHIIDNSPADILGVNQGWSEEIHSISDSYSDVLPSFNISFDLAPDLILRMSAGQAITRPNYDNLFLSTST
GYPDDRRGNEEITYGNPGLKPMKSSQADLSLEYYYGDGNLVSATYFIKDISNFIVATTQYNQQIGVVNNDLETPADNWTV
NNYENAGGGEIDGIELQLNHAFENGFGVNANYTYADGTAPAEVYTDNIGMFTESSKHSANLVGYWENDDFSARAAYNWRS
EYMVREYGKYYGNRMHDAFGTLDVTLGWNVTEAIALRLEIVNLTAEDDVQYGAAGVGTEVKPALQDDFPAWSFKGETTYK
LGASFVF

Sequences:

>Translated_887_residues
MRPSSFKKSVLATNIAILLGSAVSIGAVAAEAEAAAAATVPENIEKIEVRGIRASNKANINEKRFSNAVVDAVTAEDIGK
FPDSDVGQALGRVPGVTVGRTFGQGSSVSIRGTDPLMTLTTLNGQNVASTGWYDQMNVDRSFNYSMLPSELIGGMEVYKS
TQANLVEGGIGGTVIVKTRKPLDMDANSVFASVKGEYGSVNEDVAPELSGLYSWKNDDETFGVLLAGSYIDREYLRTGTE
ADLDWGGRSSVQPSSFLQEQERTALDATVQFRPTDNLEFGAHVLSLKLGADSIGANMYIETDTNWGEGASHCKQFNAAGV
CTLSVTPESDPSNVFFQNWARKGEMTSDTFELNADYKGDGFAISGVAGKTKAEGGTQMSANFGYGWWGDKFGQVKWAGTV
DATGKQIDINGRDMGFTQDQLDTTVGTSTWTGIKGPNSDEETYLQLDVDFDLDFGVINKFETGVRYTQHEFEKSEYRAIY
DPAKKNEFKTSDLYSGTMKLGYDGWTIPKADLDAMINATESLVDQFAYSRSAYGLIEEDNFSMYGMFSFDGEGFRGNFGL
RYIQTDVTSSGHIIDNSPADILGVNQGWSEEIHSISDSYSDVLPSFNISFDLAPDLILRMSAGQAITRPNYDNLFLSTST
GYPDDRRGNEEITYGNPGLKPMKSSQADLSLEYYYGDGNLVSATYFIKDISNFIVATTQYNQQIGVVNNDLETPADNWTV
NNYENAGGGEIDGIELQLNHAFENGFGVNANYTYADGTAPAEVYTDNIGMFTESSKHSANLVGYWENDDFSARAAYNWRS
EYMVREYGKYYGNRMHDAFGTLDVTLGWNVTEAIALRLEIVNLTAEDDVQYGAAGVGTEVKPALQDDFPAWSFKGETTYK
LGASFVF
>Mature_887_residues
MRPSSFKKSVLATNIAILLGSAVSIGAVAAEAEAAAAATVPENIEKIEVRGIRASNKANINEKRFSNAVVDAVTAEDIGK
FPDSDVGQALGRVPGVTVGRTFGQGSSVSIRGTDPLMTLTTLNGQNVASTGWYDQMNVDRSFNYSMLPSELIGGMEVYKS
TQANLVEGGIGGTVIVKTRKPLDMDANSVFASVKGEYGSVNEDVAPELSGLYSWKNDDETFGVLLAGSYIDREYLRTGTE
ADLDWGGRSSVQPSSFLQEQERTALDATVQFRPTDNLEFGAHVLSLKLGADSIGANMYIETDTNWGEGASHCKQFNAAGV
CTLSVTPESDPSNVFFQNWARKGEMTSDTFELNADYKGDGFAISGVAGKTKAEGGTQMSANFGYGWWGDKFGQVKWAGTV
DATGKQIDINGRDMGFTQDQLDTTVGTSTWTGIKGPNSDEETYLQLDVDFDLDFGVINKFETGVRYTQHEFEKSEYRAIY
DPAKKNEFKTSDLYSGTMKLGYDGWTIPKADLDAMINATESLVDQFAYSRSAYGLIEEDNFSMYGMFSFDGEGFRGNFGL
RYIQTDVTSSGHIIDNSPADILGVNQGWSEEIHSISDSYSDVLPSFNISFDLAPDLILRMSAGQAITRPNYDNLFLSTST
GYPDDRRGNEEITYGNPGLKPMKSSQADLSLEYYYGDGNLVSATYFIKDISNFIVATTQYNQQIGVVNNDLETPADNWTV
NNYENAGGGEIDGIELQLNHAFENGFGVNANYTYADGTAPAEVYTDNIGMFTESSKHSANLVGYWENDDFSARAAYNWRS
EYMVREYGKYYGNRMHDAFGTLDVTLGWNVTEAIALRLEIVNLTAEDDVQYGAAGVGTEVKPALQDDFPAWSFKGETTYK
LGASFVF

Specific function: Not Yet Known. Postulated To Participate In Iron Transport. Outer Membrane Receptor For Colicins Ia And Ib. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 96855; Mature: 96855

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSSFKKSVLATNIAILLGSAVSIGAVAAEAEAAAAATVPENIEKIEVRGIRASNKANI
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCC
NEKRFSNAVVDAVTAEDIGKFPDSDVGQALGRVPGVTVGRTFGQGSSVSIRGTDPLMTLT
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCEEEEE
TLNGQNVASTGWYDQMNVDRSFNYSMLPSELIGGMEVYKSTQANLVEGGIGGTVIVKTRK
EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEECCCCCEEEEEECC
PLDMDANSVFASVKGEYGSVNEDVAPELSGLYSWKNDDETFGVLLAGSYIDREYLRTGTE
CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCHHCHHHHHCCCC
ADLDWGGRSSVQPSSFLQEQERTALDATVQFRPTDNLEFGAHVLSLKLGADSIGANMYIE
CCCCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEE
TDTNWGEGASHCKQFNAAGVCTLSVTPESDPSNVFFQNWARKGEMTSDTFELNADYKGDG
ECCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCC
FAISGVAGKTKAEGGTQMSANFGYGWWGDKFGQVKWAGTVDATGKQIDINGRDMGFTQDQ
EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCHHH
LDTTVGTSTWTGIKGPNSDEETYLQLDVDFDLDFGVINKFETGVRYTQHEFEKSEYRAIY
HHHHCCCCEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCEEEE
DPAKKNEFKTSDLYSGTMKLGYDGWTIPKADLDAMINATESLVDQFAYSRSAYGLIEEDN
CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
FSMYGMFSFDGEGFRGNFGLRYIQTDVTSSGHIIDNSPADILGVNQGWSEEIHSISDSYS
CEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCCEEECCCCHHHHHHHHHHHHH
DVLPSFNISFDLAPDLILRMSAGQAITRPNYDNLFLSTSTGYPDDRRGNEEITYGNPGLK
HHCCCCCEEEECCCCEEEEECCCCEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
PMKSSQADLSLEYYYGDGNLVSATYFIKDISNFIVATTQYNQQIGVVNNDLETPADNWTV
CCCCCCCCEEEEEEECCCCEEEEHHHHHHHCCCEEEEEECCCEECEECCCCCCCCCCCEE
NNYENAGGGEIDGIELQLNHAFENGFGVNANYTYADGTAPAEVYTDNIGMFTESSKHSAN
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCEEEECCCCEEECCCCCCCE
LVGYWENDDFSARAAYNWRSEYMVREYGKYYGNRMHDAFGTLDVTLGWNVTEAIALRLEI
EEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCHHHEEEEEEEE
VNLTAEDDVQYGAAGVGTEVKPALQDDFPAWSFKGETTYKLGASFVF
EEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCEEEECCEECC
>Mature Secondary Structure
MRPSSFKKSVLATNIAILLGSAVSIGAVAAEAEAAAAATVPENIEKIEVRGIRASNKANI
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCC
NEKRFSNAVVDAVTAEDIGKFPDSDVGQALGRVPGVTVGRTFGQGSSVSIRGTDPLMTLT
CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCCEEEEECCCCEEEEE
TLNGQNVASTGWYDQMNVDRSFNYSMLPSELIGGMEVYKSTQANLVEGGIGGTVIVKTRK
EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHCCCCCEEECCCCCEEEEEECC
PLDMDANSVFASVKGEYGSVNEDVAPELSGLYSWKNDDETFGVLLAGSYIDREYLRTGTE
CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCCEEEEEEECCHHCHHHHHCCCC
ADLDWGGRSSVQPSSFLQEQERTALDATVQFRPTDNLEFGAHVLSLKLGADSIGANMYIE
CCCCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEEE
TDTNWGEGASHCKQFNAAGVCTLSVTPESDPSNVFFQNWARKGEMTSDTFELNADYKGDG
ECCCCCCCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCCCC
FAISGVAGKTKAEGGTQMSANFGYGWWGDKFGQVKWAGTVDATGKQIDINGRDMGFTQDQ
EEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCHHH
LDTTVGTSTWTGIKGPNSDEETYLQLDVDFDLDFGVINKFETGVRYTQHEFEKSEYRAIY
HHHHCCCCEECCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHCCEEEE
DPAKKNEFKTSDLYSGTMKLGYDGWTIPKADLDAMINATESLVDQFAYSRSAYGLIEEDN
CCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
FSMYGMFSFDGEGFRGNFGLRYIQTDVTSSGHIIDNSPADILGVNQGWSEEIHSISDSYS
CEEEEEEEECCCCCCCCCCEEEEEEECCCCCCEECCCCCCEEECCCCHHHHHHHHHHHHH
DVLPSFNISFDLAPDLILRMSAGQAITRPNYDNLFLSTSTGYPDDRRGNEEITYGNPGLK
HHCCCCCEEEECCCCEEEEECCCCEECCCCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
PMKSSQADLSLEYYYGDGNLVSATYFIKDISNFIVATTQYNQQIGVVNNDLETPADNWTV
CCCCCCCCEEEEEEECCCCEEEEHHHHHHHCCCEEEEEECCCEECEECCCCCCCCCCCEE
NNYENAGGGEIDGIELQLNHAFENGFGVNANYTYADGTAPAEVYTDNIGMFTESSKHSAN
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCEEEECCCCEEECCCCCCCE
LVGYWENDDFSARAAYNWRSEYMVREYGKYYGNRMHDAFGTLDVTLGWNVTEAIALRLEI
EEEEECCCCCCEEEEECCHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCHHHEEEEEEEE
VNLTAEDDVQYGAAGVGTEVKPALQDDFPAWSFKGETTYKLGASFVF
EEECCCCCCCCCCCCCCCCCCCHHHCCCCCEEECCCCEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA