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The map label for this gene is rimM [H]

Identifier: 117921455

GI number: 117921455

Start: 3622837

End: 3623367

Strand: Reverse

Name: rimM [H]

Synonym: Shewana3_3016

Alternate gene names: 117921455

Gene position: 3623367-3622837 (Counterclockwise)

Preceding gene: 117921456

Following gene: 117921454

Centisome position: 72.87

GC content: 46.33

Gene sequence:

>531_bases
ATGAGCAGTAACCAACAGCCAGTCGTACTGGGGAAATTAGGCTCCTGTCATGGCATTAAAGGTTGGCTGAAAATCACCGC
CTATACCGATTCTGTTGAAGGTATCTTTGACTATTCACCTTGGCTTATTAAAGAAAATGGTGAATGGCGCGAAGTAAAAG
TCATTCAGTGGCGTTACCAAGGTAAGGCGGTTGTCGCCGAGCTTGAAGGTGTCACCACGCGGGAGCGAGCACAAATGCTC
ACCAATTGCGAAATTGGGATCCTGCCAGAGCAGATGAACGATTTGCCAGAAGACGAGTTCTATTGGCGTGACCTCATCGG
TTGTGAAGTGATTAATACCAATGGCTATAACATGGGTGTTGTCGATCAAATCGTGGAAACCGGTTCGAACGATGTGCTCT
TAGTGAAAGCCAACGCGAAAGATAGCTTCGGCAAAGTGGAACGTATGCTTCCCTTTGTCCCAGGGCAATTCATCTTAAAG
GTGGATGTCCAAGGTAAACAGATTTTAGTGGATTGGGATCCTGACTTTTAA

Upstream 100 bases:

>100_bases
TTGAGCACTGGGTTGCGAACGGCGCTGCGACAACTGATCGCGTAGCAAAATTGATCAAAGACGCTAAAGCAGCTGCTTAA
TAGCGTTAAGGTATAGATTG

Downstream 100 bases:

>100_bases
GTCGAGGTACAACATATGTGGTTAGGGGTAATTACCCTGTTCCCAGAAATGTTTCGTGCCGTAACAGACTTTGGGGTTAC
GGGTCGTGCCGTGAAGAACG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQGKAVVAELEGVTTRERAQML
TNCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGVVDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILK
VDVQGKQILVDWDPDF

Sequences:

>Translated_176_residues
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQGKAVVAELEGVTTRERAQML
TNCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGVVDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILK
VDVQGKQILVDWDPDF
>Mature_175_residues
SSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQGKAVVAELEGVTTRERAQMLT
NCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGVVDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKV
DVQGKQILVDWDPDF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=48.8235294117647, Blast_Score=193, Evalue=7e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19943; Mature: 19812

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ
CCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVAELEGVTTRERAQMLTNCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGV
CCEEEEEECCCCHHHHHHHHHCCEEEEECHHHHCCCCCHHHHHHCCCEEEEECCCCCCCH
VDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKVDVQGKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCC
>Mature Secondary Structure 
SSNQQPVVLGKLGSCHGIKGWLKITAYTDSVEGIFDYSPWLIKENGEWREVKVIQWRYQ
CCCCCCEEEECCCCCCCCCEEEEEEEEECCCCEEECCCCEEEECCCCEEEEEEEEEEEC
GKAVVAELEGVTTRERAQMLTNCEIGILPEQMNDLPEDEFYWRDLIGCEVINTNGYNMGV
CCEEEEEECCCCHHHHHHHHHCCEEEEECHHHHCCCCCHHHHHHCCCEEEEECCCCCCCH
VDQIVETGSNDVLLVKANAKDSFGKVERMLPFVPGQFILKVDVQGKQILVDWDPDF
HHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]