| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is fct [H]
Identifier: 117921384
GI number: 117921384
Start: 3535861
End: 3538332
Strand: Direct
Name: fct [H]
Synonym: Shewana3_2944
Alternate gene names: 117921384
Gene position: 3535861-3538332 (Clockwise)
Preceding gene: 117921380
Following gene: 117921389
Centisome position: 71.11
GC content: 48.79
Gene sequence:
>2472_bases ATGCCAGTATTACAGCCTGTATTTCGCTTATCACTTATTGCACTCGCCTGCCTCAGTGCTTTACCACACACAGCCTACGC CGATGACACACCTTCCGCTCGCGATGAAAACGTCGAACGCATAACGGTATACGGCAGACAAAACTCTGTGGTGAAAAACT CAGGGCTGGCGACTAAGTCAGATATGTCCTTAATGGAAACCCCTGCGGCGGTTGTTATCGTTGACCAGGAGCTGATTAAC AGCCAAGGAGTCGATAATCTGCAGGACTTGATTCGCAATATCAGCGGGGTGACTCAAGCAGGCAATAACTACGGCATTGG GGATAACTTGGTTATTCGCGGTCTTGGCGCAAACTATACCTATGACGGCATGTATGGCGGTGCCGGCCTTGGCAACACCT TTAACCCCACTCGCTCCCTAACTAATGTGGAATCCGTTGAAGTTTTAAAAGGGCCAGCGACTGGGCTCTACGGCATGGGC AGCGCGGGCGGCGTGATCAACCTGATTGAAAAGAAACCGCAATTTGAATCCAAACACAAAATCACCACTGAAGTTGGCCA GTGGGATACCTACTCGCTCGCCATCGATAGCACGGGGGGGATCACAGATGATCTTGCTTATCGTTTAGTCGCCAAAACCG CCCGCAGTGAAGGCTACCGTGATTTAGGCGCCGACCGTGATGAAGTGTTCGGCTCACTCAAGTGGGTATTAAGTGATAGC CAAGATCTGATGCTATCAGGCGCGTATATCAAAGACGCCATTGCCGTTGACTCCATCGGCCATCCAATCCGTATCTACAA TGCCGATTCTGTCGGAGGTAAAACCGCTGGTGAAGTCACTTGGCAAGATTTGATAAACGATCCTAATGGTCAAGGCATAC AGCTAACCGACGAGCAGCGTCAGCAATTGGCGGCATCACTCGCCAGTGGTGATGGCTTAACTCCTTATTCCTTCGGTGAC GCGGGATTAATTTCTCCCATGGCAAAGGATAATGAAGGTGAAGAATTAAGATTCAAGCTGACCCACAATATCTACTTTAC CGATAATCTGTTCCTCAACCAGCAGTTGCAATATCGCGACTACACCACAGGTTTTGCCCGCCAAACAGGGGCTTACAACT ATGTGTATTGGAAGCGTAAAATCAAGATTGGTGGCGTACCGACTGATGTGATTAACGAAGATCCCCGCGCGCCACTGGTT GAAAATGGTGTGCTCTATCCCTTTGCCGCCAGACGTCAGGAATACCGCCAGCTCGATGCCGAAGAAACCTCGTGGCAGTA TTTTGCCGATCTACGTTACGACTTCCAAATCGGCAATATCGACAACGAATTGCTGGTGAATGCTAACTACGAAGACCGCG ATATTCGCCTCGAGCAATTCTCGATTTACGATGCAGACCAAGTCATTAAAAACAAACAAGGCGAAGTGATTTACCGTGGG TCGCTGCCATACATTTACGATATCCGCAATCCAAACTGGGGAACGGGTAAATTTGCCGACTACGATCCGCTCAAAACCGC CAACTACAATAAAAAAGTCAGCGCTTGGGGCTTAGGCGTGCAACATGTGGGTTATTTAGGTTATGGCTTTACCACCCGTG TGGGCGTGGCCTTTAACGAAATCAAACAGAGCTATGAGCACTTAGGTGTGGATGAGCGCTACAGCGCGAGTCAAGCCAGC CCCACTCCTGAGGAAGATAGCAAAGATAACGGTGTGACCTACAACTTGGGCTTAACCTATATGCCCATTGACGATTTATC GTTTTTCGTCAATCACTCAAAGGGCCGCACCGCCTATAGCATCTTAGGCTCAATCACAGGGGAAAATACCGACCGCGAAG ACTCAGAATCCGTCAGTAACGATCTCGGTATGCGCTTTAAAGCCTTTGATGATCAAATGTTGGCCTCACTGGTGTTCTTT AAAAGCTCACGCACAAATGTGCCTTACACCAACCCAGACTATAACGCTGGTGTGTCAGGTGCCGAGGTGCCGGTGTACTT TTACGATGGCAGCGAAGATACCCAAGGGGTCGAGTTGGATCTCAATGCCCATCTAAACGATAACTGGCGCATCAATCTTA ACGGCATGTATCAGGATGCGAGGGATAAACAAAACCCGAATGACAAAGCCAACTACGACAGCCGTCAAAAAGGTGTGCCC TATGTGACAGCCAGTGCTTGGGTAACCTATGGTGCAGACTGGTTTGCCTTATCAAGCCCTATTGAGCTGAGTTTAGGTGC CAAGTATGTGGATGATAGAAGCACACACTCAAGCTCATTTGGTATCCCTGATGGTTATGTGCCGAGCTACACCTTAGTGG ATTCTGCCATCAGCTATGCCACCGACTCCTGGAAGTTACAATTGAATATCAACAACCTATTCAATAAAGACTATTACAGT AAGGCCATGTTCCTCGGTGGTATGCCGGGCGAAGAGCGTAATGTGAAGCTGCAATATAGCTACAGTTTCTAA
Upstream 100 bases:
>100_bases AAGATAACCAAGGTTCATGGTCTTTTAAGCGCCAAACAAGGGGTTGCAAAGTAGATGAAAATCATTATCATTCGCGACCT TTCTGATTGGGGGACTTTCA
Downstream 100 bases:
>100_bases GCGTTTTCCTTAAGCCCATAAACAACAAGAGAGCCCATCGGCTCTCTTGTTTGTTTTAGCCAGCTGACTTAACTGACATT CTCCCGGTCGCCACGCATCA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 823; Mature: 822
Protein sequence:
>823_residues MPVLQPVFRLSLIALACLSALPHTAYADDTPSARDENVERITVYGRQNSVVKNSGLATKSDMSLMETPAAVVIVDQELIN SQGVDNLQDLIRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMG SAGGVINLIEKKPQFESKHKITTEVGQWDTYSLAIDSTGGITDDLAYRLVAKTARSEGYRDLGADRDEVFGSLKWVLSDS QDLMLSGAYIKDAIAVDSIGHPIRIYNADSVGGKTAGEVTWQDLINDPNGQGIQLTDEQRQQLAASLASGDGLTPYSFGD AGLISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTTGFARQTGAYNYVYWKRKIKIGGVPTDVINEDPRAPLV ENGVLYPFAARRQEYRQLDAEETSWQYFADLRYDFQIGNIDNELLVNANYEDRDIRLEQFSIYDADQVIKNKQGEVIYRG SLPYIYDIRNPNWGTGKFADYDPLKTANYNKKVSAWGLGVQHVGYLGYGFTTRVGVAFNEIKQSYEHLGVDERYSASQAS PTPEEDSKDNGVTYNLGLTYMPIDDLSFFVNHSKGRTAYSILGSITGENTDREDSESVSNDLGMRFKAFDDQMLASLVFF KSSRTNVPYTNPDYNAGVSGAEVPVYFYDGSEDTQGVELDLNAHLNDNWRINLNGMYQDARDKQNPNDKANYDSRQKGVP YVTASAWVTYGADWFALSSPIELSLGAKYVDDRSTHSSSFGIPDGYVPSYTLVDSAISYATDSWKLQLNINNLFNKDYYS KAMFLGGMPGEERNVKLQYSYSF
Sequences:
>Translated_823_residues MPVLQPVFRLSLIALACLSALPHTAYADDTPSARDENVERITVYGRQNSVVKNSGLATKSDMSLMETPAAVVIVDQELIN SQGVDNLQDLIRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMG SAGGVINLIEKKPQFESKHKITTEVGQWDTYSLAIDSTGGITDDLAYRLVAKTARSEGYRDLGADRDEVFGSLKWVLSDS QDLMLSGAYIKDAIAVDSIGHPIRIYNADSVGGKTAGEVTWQDLINDPNGQGIQLTDEQRQQLAASLASGDGLTPYSFGD AGLISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTTGFARQTGAYNYVYWKRKIKIGGVPTDVINEDPRAPLV ENGVLYPFAARRQEYRQLDAEETSWQYFADLRYDFQIGNIDNELLVNANYEDRDIRLEQFSIYDADQVIKNKQGEVIYRG SLPYIYDIRNPNWGTGKFADYDPLKTANYNKKVSAWGLGVQHVGYLGYGFTTRVGVAFNEIKQSYEHLGVDERYSASQAS PTPEEDSKDNGVTYNLGLTYMPIDDLSFFVNHSKGRTAYSILGSITGENTDREDSESVSNDLGMRFKAFDDQMLASLVFF KSSRTNVPYTNPDYNAGVSGAEVPVYFYDGSEDTQGVELDLNAHLNDNWRINLNGMYQDARDKQNPNDKANYDSRQKGVP YVTASAWVTYGADWFALSSPIELSLGAKYVDDRSTHSSSFGIPDGYVPSYTLVDSAISYATDSWKLQLNINNLFNKDYYS KAMFLGGMPGEERNVKLQYSYSF >Mature_822_residues PVLQPVFRLSLIALACLSALPHTAYADDTPSARDENVERITVYGRQNSVVKNSGLATKSDMSLMETPAAVVIVDQELINS QGVDNLQDLIRNISGVTQAGNNYGIGDNLVIRGLGANYTYDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGS AGGVINLIEKKPQFESKHKITTEVGQWDTYSLAIDSTGGITDDLAYRLVAKTARSEGYRDLGADRDEVFGSLKWVLSDSQ DLMLSGAYIKDAIAVDSIGHPIRIYNADSVGGKTAGEVTWQDLINDPNGQGIQLTDEQRQQLAASLASGDGLTPYSFGDA GLISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRDYTTGFARQTGAYNYVYWKRKIKIGGVPTDVINEDPRAPLVE NGVLYPFAARRQEYRQLDAEETSWQYFADLRYDFQIGNIDNELLVNANYEDRDIRLEQFSIYDADQVIKNKQGEVIYRGS LPYIYDIRNPNWGTGKFADYDPLKTANYNKKVSAWGLGVQHVGYLGYGFTTRVGVAFNEIKQSYEHLGVDERYSASQASP TPEEDSKDNGVTYNLGLTYMPIDDLSFFVNHSKGRTAYSILGSITGENTDREDSESVSNDLGMRFKAFDDQMLASLVFFK SSRTNVPYTNPDYNAGVSGAEVPVYFYDGSEDTQGVELDLNAHLNDNWRINLNGMYQDARDKQNPNDKANYDSRQKGVPY VTASAWVTYGADWFALSSPIELSLGAKYVDDRSTHSSSFGIPDGYVPSYTLVDSAISYATDSWKLQLNINNLFNKDYYSK AMFLGGMPGEERNVKLQYSYSF
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 91343; Mature: 91212
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVLQPVFRLSLIALACLSALPHTAYADDTPSARDENVERITVYGRQNSVVKNSGLATKS CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCC DMSLMETPAAVVIVDQELINSQGVDNLQDLIRNISGVTQAGNNYGIGDNLVIRGLGANYT CCHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEE YDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHK ECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC ITTEVGQWDTYSLAIDSTGGITDDLAYRLVAKTARSEGYRDLGADRDEVFGSLKWVLSDS EEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHEEECCC QDLMLSGAYIKDAIAVDSIGHPIRIYNADSVGGKTAGEVTWQDLINDPNGQGIQLTDEQR CCEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCCCEEECHHHH QQLAASLASGDGLTPYSFGDAGLISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCEEECCEEEECC YTTGFARQTGAYNYVYWKRKIKIGGVPTDVINEDPRAPLVENGVLYPFAARRQEYRQLDA CCCCHHHHCCCCEEEEEEEEEEECCCCHHHCCCCCCCCHHHCCEECCHHHHHHHHHHCCC EETSWQYFADLRYDFQIGNIDNELLVNANYEDRDIRLEQFSIYDADQVIKNKQGEVIYRG CCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEEC SLPYIYDIRNPNWGTGKFADYDPLKTANYNKKVSAWGLGVQHVGYLGYGFTTRVGVAFNE CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCEECCCHHHHHHHHHHH IKQSYEHLGVDERYSASQASPTPEEDSKDNGVTYNLGLTYMPIDDLSFFVNHSKGRTAYS HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHEEEECCCCCEEEH ILGSITGENTDREDSESVSNDLGMRFKAFDDQMLASLVFFKSSRTNVPYTNPDYNAGVSG HHHHHCCCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AEVPVYFYDGSEDTQGVELDLNAHLNDNWRINLNGMYQDARDKQNPNDKANYDSRQKGVP CEEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCHHCCCCCCCCCCCCHHHCCCC YVTASAWVTYGADWFALSSPIELSLGAKYVDDRSTHSSSFGIPDGYVPSYTLVDSAISYA EEEECCEEEECCCEEEECCCEEEECCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC TDSWKLQLNINNLFNKDYYSKAMFLGGMPGEERNVKLQYSYSF CCCEEEEEEEHHHCCCHHHHHHHEECCCCCCCCCEEEEEEECC >Mature Secondary Structure PVLQPVFRLSLIALACLSALPHTAYADDTPSARDENVERITVYGRQNSVVKNSGLATKS CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCC DMSLMETPAAVVIVDQELINSQGVDNLQDLIRNISGVTQAGNNYGIGDNLVIRGLGANYT CCHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEE YDGMYGGAGLGNTFNPTRSLTNVESVEVLKGPATGLYGMGSAGGVINLIEKKPQFESKHK ECCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC ITTEVGQWDTYSLAIDSTGGITDDLAYRLVAKTARSEGYRDLGADRDEVFGSLKWVLSDS EEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHEEECCC QDLMLSGAYIKDAIAVDSIGHPIRIYNADSVGGKTAGEVTWQDLINDPNGQGIQLTDEQR CCEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEHHHHHCCCCCCCEEECHHHH QQLAASLASGDGLTPYSFGDAGLISPMAKDNEGEELRFKLTHNIYFTDNLFLNQQLQYRD HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCEEECCEEEECC YTTGFARQTGAYNYVYWKRKIKIGGVPTDVINEDPRAPLVENGVLYPFAARRQEYRQLDA CCCCHHHHCCCCEEEEEEEEEEECCCCHHHCCCCCCCCHHHCCEECCHHHHHHHHHHCCC EETSWQYFADLRYDFQIGNIDNELLVNANYEDRDIRLEQFSIYDADQVIKNKQGEVIYRG CCCCEEEEEEEEEEEEECCCCCEEEEECCCCCCCEEEEEEEECCHHHHHHCCCCCEEEEC SLPYIYDIRNPNWGTGKFADYDPLKTANYNKKVSAWGLGVQHVGYLGYGFTTRVGVAFNE CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCEECCCHHHHHHHHHHH IKQSYEHLGVDERYSASQASPTPEEDSKDNGVTYNLGLTYMPIDDLSFFVNHSKGRTAYS HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHEEEECCCCCEEEH ILGSITGENTDREDSESVSNDLGMRFKAFDDQMLASLVFFKSSRTNVPYTNPDYNAGVSG HHHHHCCCCCCCCHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC AEVPVYFYDGSEDTQGVELDLNAHLNDNWRINLNGMYQDARDKQNPNDKANYDSRQKGVP CEEEEEEECCCCCCCCEEEEEECCCCCCEEEEECCCCCCHHCCCCCCCCCCCCHHHCCCC YVTASAWVTYGADWFALSSPIELSLGAKYVDDRSTHSSSFGIPDGYVPSYTLVDSAISYA EEEECCEEEECCCEEEECCCEEEECCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC TDSWKLQLNINNLFNKDYYSKAMFLGGMPGEERNVKLQYSYSF CCCEEEEEEEHHHCCCHHHHHHHEECCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]