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The map label for this gene is smpA [H]

Identifier: 117921389

GI number: 117921389

Start: 3543604

End: 3544128

Strand: Direct

Name: smpA [H]

Synonym: Shewana3_2949

Alternate gene names: 117921389

Gene position: 3543604-3544128 (Clockwise)

Preceding gene: 117921384

Following gene: 117921392

Centisome position: 71.27

GC content: 47.43

Gene sequence:

>525_bases
ATGGCCGCCAGATTTTCAGAAGTAGCGCATACAATGATCAATAAAAAGCAAAGTCTTACCCTGCTGAGCGCCATTGCGCT
CTCAGTTTCGCTCAGTGCCTGTAGCGTGTTTGATTGGCTGATCTATAAGCCCGATATTCCGCAAGGCAACTACATGGAGC
CGCAACAGGTTGAAAAGTTGCGTATCGACATGACCAAAGAGCAGGCCGAATACATTCTTGGTCGCCCAGTATTGCGTGAC
AGCTTTGCCGATGACACTTGGTATTATGTGTATCACTATAAGAGTGGCCGTGATGCGAGCATTACCCACAAAGAACTGAT
CCTGCACTTTACCGGTAACAAATTAAGCTTAGTGAAGGGCGACTATGACTTAAGCCCAGAGTTTAATACGCCGCTTGAGC
AGAGTAAGTTACCTATGGCCAACACCGCTGAGTCTGCGCCACTCGTGCCAGCACAGCGCCCAGATGAAAAGCCATTAGTG
AAAGAAAATCAAACCGAAGCGCAAGTTCAAAAGCCAATCAAGTAA

Upstream 100 bases:

>100_bases
GAACTAAAACGCGCCGCTTAGGTCGAAAACTCACACAATTGCAACGATAAGCGCCGCAACGCCCAATTACCCTTGTCATA
AGGGGGAGTGCTTGGGTATG

Downstream 100 bases:

>100_bases
GCACACTGGTTTAACACTTGCCTTAAACACAAAAAGCGCTCATGGCGCTTTTTGTTTGTTCGTGTTGCGGACAGATTAAG
ACACCCGTCCACCAGTCACT

Product: SmpA/OmlA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAARFSEVAHTMINKKQSLTLLSAIALSVSLSACSVFDWLIYKPDIPQGNYMEPQQVEKLRIDMTKEQAEYILGRPVLRD
SFADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKGDYDLSPEFNTPLEQSKLPMANTAESAPLVPAQRPDEKPLV
KENQTEAQVQKPIK

Sequences:

>Translated_174_residues
MAARFSEVAHTMINKKQSLTLLSAIALSVSLSACSVFDWLIYKPDIPQGNYMEPQQVEKLRIDMTKEQAEYILGRPVLRD
SFADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKGDYDLSPEFNTPLEQSKLPMANTAESAPLVPAQRPDEKPLV
KENQTEAQVQKPIK
>Mature_173_residues
AARFSEVAHTMINKKQSLTLLSAIALSVSLSACSVFDWLIYKPDIPQGNYMEPQQVEKLRIDMTKEQAEYILGRPVLRDS
FADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKGDYDLSPEFNTPLEQSKLPMANTAESAPLVPAQRPDEKPLVK
ENQTEAQVQKPIK

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=92, Percent_Identity=40.2173913043478, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 19759; Mature: 19628

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARFSEVAHTMINKKQSLTLLSAIALSVSLSACSVFDWLIYKPDIPQGNYMEPQQVEKL
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHH
RIDMTKEQAEYILGRPVLRDSFADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKG
HHCCCHHHHHHHHCCCHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEEEC
DYDLSPEFNTPLEQSKLPMANTAESAPLVPAQRPDEKPLVKENQTEAQVQKPIK
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC
>Mature Secondary Structure 
AARFSEVAHTMINKKQSLTLLSAIALSVSLSACSVFDWLIYKPDIPQGNYMEPQQVEKL
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHH
RIDMTKEQAEYILGRPVLRDSFADDTWYYVYHYKSGRDASITHKELILHFTGNKLSLVKG
HHCCCHHHHHHHHCCCHHHCCCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCEEEEEEC
DYDLSPEFNTPLEQSKLPMANTAESAPLVPAQRPDEKPLVKENQTEAQVQKPIK
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA