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The map label for this gene is rdgC [H]

Identifier: 117921322

GI number: 117921322

Start: 3445737

End: 3446651

Strand: Direct

Name: rdgC [H]

Synonym: Shewana3_2881

Alternate gene names: 117921322

Gene position: 3445737-3446651 (Clockwise)

Preceding gene: 117921316

Following gene: 117921324

Centisome position: 69.3

GC content: 47.1

Gene sequence:

>915_bases
ATGTGGTTTAAAAATCTTACTCTTTACCGTTTCAATAAACCTTTTTCCATCGAAACAGAAGCACTTGAAACCGCACTCGC
CGATTTCACATTCTCTCCGTGCGGCAGCCAAGACGTCAGCAAATTTGGGTTTTCCAATGCCTTAGGTAAACAGGGCAGCA
CCTTAGTGCACAGCGCCAACAATCGTCACCTTATCTGTGTGACGAAAGAAGAAAAAATTCTGCCAGGCCAAGTGATTAAA
GAATCATTAGAAGAAAAAGTGGCGCAAATTGAAGACGAAGAAAATCGTAAGCTCGCCAAAAAAGAAAAAGATGCGCTGAA
AGATGAAATCATCACTAGCCTATTACCGCGCGCCTTTTCACGTCGCAGCCAAACTCGCGCGCTGATTTTACCTGAGCTGG
AAATGATCCTCGTCGACAGCTCTAGCGCCACTAAGGCCGAAGAATTGTTAGCCTTATTACGTAAGGCCTTAGGCAGCTTG
CCTGTGATCCCATTAAGCTTTAAAGCGCCAGTTGAAGCCAACCTCACTCAATGGTTAAAGGATGGCAGCGCGCCCTTACC
CTTTGAAATGCAAGATGAAGCCGAGTTGAAATCGGCCGCCGATGAAGGCGGTATCGTGCGCTTTAAGCAGCAAGATCTTA
AAGAAGATGAAGTACTTGCCCACCTCGAAACAGGCAAAGAAGTACACAAGCTCGCCCTGCACTTTGGCCAATCGATTGCG
CTACTGCTGCAATCCGATGCCAGCGTAAAACGCTTAAAATTCTCCGAAGAATTTAGAGCGGGGAATGATGAGCTGGGGAA
TGAAGATCCAATGGCGCGCCTCGATGCCGACTTTGCCTTAATGGGCAGTGAGTTAGTAGCTCTAATGCACGCACTAGTTT
CGGCATTAGGTGGCCTTGAAGAGACTCAAGCTTAA

Upstream 100 bases:

>100_bases
GAATTCTGCAACCGAGGCAAAATTTAACGATTTAAGGTAGGTTTACCCCGTTGCAACTATGCCGTAAACTGCGACTTTAT
TTTTCCAATGAGCGCATCTT

Downstream 100 bases:

>100_bases
GTCTTAAGTGAGCAGATAAAGCAGAGCAACACCTAGCTAAAGCTCCAAACAAGCCTAAGTGAAACTAAGCGAAATAATGT
AAAAAGGCGCCGCAGTGGAC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKQGSTLVHSANNRHLICVTKEEKILPGQVIK
ESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFSRRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVEANLTQWLKDGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGGLEETQA

Sequences:

>Translated_304_residues
MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKQGSTLVHSANNRHLICVTKEEKILPGQVIK
ESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFSRRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVEANLTQWLKDGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGGLEETQA
>Mature_304_residues
MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKQGSTLVHSANNRHLICVTKEEKILPGQVIK
ESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFSRRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSL
PVIPLSFKAPVEANLTQWLKDGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA
LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGGLEETQA

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=298, Percent_Identity=51.3422818791946, Blast_Score=310, Evalue=7e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 33592; Mature: 33592

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKQGSTLVHSAN
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
NRHLICVTKEEKILPGQVIKESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFS
CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVEANLTQWLK
HHHCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH
DGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA
CCCCCCCCCCCCHHHHHHCCCCCCEEEECHHCCCHHHHHHHHHCCHHHHHHHHHHCCHHE
LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGGLE
EHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCH
ETQA
HCCC
>Mature Secondary Structure
MWFKNLTLYRFNKPFSIETEALETALADFTFSPCGSQDVSKFGFSNALGKQGSTLVHSAN
CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
NRHLICVTKEEKILPGQVIKESLEEKVAQIEDEENRKLAKKEKDALKDEIITSLLPRAFS
CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRSQTRALILPELEMILVDSSSATKAEELLALLRKALGSLPVIPLSFKAPVEANLTQWLK
HHHCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHH
DGSAPLPFEMQDEAELKSAADEGGIVRFKQQDLKEDEVLAHLETGKEVHKLALHFGQSIA
CCCCCCCCCCCCHHHHHHCCCCCCEEEECHHCCCHHHHHHHHHCCHHHHHHHHHHCCHHE
LLLQSDASVKRLKFSEEFRAGNDELGNEDPMARLDADFALMGSELVALMHALVSALGGLE
EHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCH
ETQA
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA