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The map label for this gene is cph2 [H]

Identifier: 117921311

GI number: 117921311

Start: 3432126

End: 3433793

Strand: Reverse

Name: cph2 [H]

Synonym: Shewana3_2870

Alternate gene names: 117921311

Gene position: 3433793-3432126 (Counterclockwise)

Preceding gene: 117921313

Following gene: 117921305

Centisome position: 69.06

GC content: 46.4

Gene sequence:

>1668_bases
ATGAGTAAACCTAACTTGCAACATTTTTGGTGCTTTTTGCTGCTTCTTTGGACATTTAGTCCGTTTGCCCATAGCGCTGA
AATTGCGTTGGATTCCCCCTATTTATTCCATGCCGATGCGAAACAGCTCCCTCCCGAGCATTTTAATGACGTGACCCAGT
GGATGGGGCCACTTGAGGAGGCTCGGTCAGTCAGCCTTGCGGGCGGTGACTATTGGATGGTATCACCCGTGATGGTCAAT
AGCCGTCAAAGCCATTGGGTGGTGGATGCCAGTAATTCGATTGTGGAATCCGTTGATTATTGGTTACTTGGCAGTGATGG
CTCAGTGCAAACGGCCCATAGTGGTTACTATGCGCCCTATGAATTTTTATTCGATTACGGCCGTAAAGTGCGGCTGAATA
TGGGGACCGATTATTGGTTAGTGACTCGGCTCAGTAGCCGCTATTATTCCTCCGCGCCCGAATTGGCTATAGAGTCGGAA
GAAGTGCACCAGTTAACCAACGACCGTGTGGCCATGGCGATACTGATTTGTTTAGGGGGATTGCTCTTTATCGCTCTATA
CAATCTACTGATTTACATCTCTATTTTTGATAAAGCCTTCTTATACTATGGTCTTTATGTATTGACCTATTTTGGTGGCT
GGGCACTGACCTTCCATTTACCGGCGCATCTATTTAACTTCCATCAGCTTGAATTACATCATCTGTTTTTTATCAGCTTG
CCGATATTTAACATCATGTTCTACAAGCACTTCTTACAGTTACCTAGCTATTCGCCTAGATTATGGCGGCTTAGCCAATA
TTTATTAGTCGCGTGTATTTTAGCCTTGCCGACCAGTATTTGGTTATTGCCCTATACCGCGATTATTGCCTCTGTCTTAA
TCATGCTGTGGATTGCGTTAGCGATCACCTGTGGCAATGTGTGCTTGATGAAAGGCTTTGCCCCCGCGCGCTATTTCATC
ATGGCCTTTAGTTGTTTGCTGTTGCCTGCGGTGATTATTCTTCCGGGCAATATGGGGATCACCCCTGATTTTATTGAACA
TGCCGAGTTTGCGACACTACTGGGTGGCACTGTGGATGCTTTGCTGTTATCTCTTGCGTTAGCGAATAAGCTCAAACTGT
TGGCCGAAGAGCGCAAGGCCCACATTGAAGAACTCGGTATCGCTTGGGAGAAGGCCAGACTCGATGGTTTAACTCGAGTC
GGTAATCGTTATGCCTTTGATGAATATATGAATTCGCAATTAACCTTTGCCGATAAGGTTGTACAACCAACGGCCTTGGT
GCTGCTTAATGTCGACAGTCTTAAAATGGTGAACGATACCTTAGGGCATCAGGAAGGAGACCGTTTACTGCAAAATCTAG
TGCAGTTTTTACAGGCGACCAATATTGCTCACCTTAAGATTTACCGGATCAGCGGCGATGAATTTGTGCTTATTCTGCCC
GCAAATGGCATGGGGATCTTAACCAGCAGCTTAAAGGGATTAACGGCGCAATTTGCCGCCGAAGGCTTAAAGGATTGTCA
GTTTAGTTTTGGCTTTGCCATCAATAGCGATGTGGCCGAACCCCACGAGTGGCTACGCTGCGCCGACAGCAATTTGTATC
AGTCACGAATGGAAAAACGTCGTCAAGAATTCGCCGATACCCGCGCGGGTGAGATAGTCTCTATTTAA

Upstream 100 bases:

>100_bases
AGTCTAATCAATTGTAAAAAATAAAATGTAGTCATAAAGTTAACACTTTAAATTGATTTTCTGCGTGGAACGAGACGCTG
GTATATAAACTTAGATACCT

Downstream 100 bases:

>100_bases
AAAACGGCTTATTTAAAAGAGTCTCGATTTAAAAGACGGCCTATTTAAATTTGAATACACAATATCTGGATAAAAAGGGG
CTGCATAACGCAGCCCCTTT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 555; Mature: 554

Protein sequence:

>555_residues
MSKPNLQHFWCFLLLLWTFSPFAHSAEIALDSPYLFHADAKQLPPEHFNDVTQWMGPLEEARSVSLAGGDYWMVSPVMVN
SRQSHWVVDASNSIVESVDYWLLGSDGSVQTAHSGYYAPYEFLFDYGRKVRLNMGTDYWLVTRLSSRYYSSAPELAIESE
EVHQLTNDRVAMAILICLGGLLFIALYNLLIYISIFDKAFLYYGLYVLTYFGGWALTFHLPAHLFNFHQLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLLVACILALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
MAFSCLLLPAVIILPGNMGITPDFIEHAEFATLLGGTVDALLLSLALANKLKLLAEERKAHIEELGIAWEKARLDGLTRV
GNRYAFDEYMNSQLTFADKVVQPTALVLLNVDSLKMVNDTLGHQEGDRLLQNLVQFLQATNIAHLKIYRISGDEFVLILP
ANGMGILTSSLKGLTAQFAAEGLKDCQFSFGFAINSDVAEPHEWLRCADSNLYQSRMEKRRQEFADTRAGEIVSI

Sequences:

>Translated_555_residues
MSKPNLQHFWCFLLLLWTFSPFAHSAEIALDSPYLFHADAKQLPPEHFNDVTQWMGPLEEARSVSLAGGDYWMVSPVMVN
SRQSHWVVDASNSIVESVDYWLLGSDGSVQTAHSGYYAPYEFLFDYGRKVRLNMGTDYWLVTRLSSRYYSSAPELAIESE
EVHQLTNDRVAMAILICLGGLLFIALYNLLIYISIFDKAFLYYGLYVLTYFGGWALTFHLPAHLFNFHQLELHHLFFISL
PIFNIMFYKHFLQLPSYSPRLWRLSQYLLVACILALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFI
MAFSCLLLPAVIILPGNMGITPDFIEHAEFATLLGGTVDALLLSLALANKLKLLAEERKAHIEELGIAWEKARLDGLTRV
GNRYAFDEYMNSQLTFADKVVQPTALVLLNVDSLKMVNDTLGHQEGDRLLQNLVQFLQATNIAHLKIYRISGDEFVLILP
ANGMGILTSSLKGLTAQFAAEGLKDCQFSFGFAINSDVAEPHEWLRCADSNLYQSRMEKRRQEFADTRAGEIVSI
>Mature_554_residues
SKPNLQHFWCFLLLLWTFSPFAHSAEIALDSPYLFHADAKQLPPEHFNDVTQWMGPLEEARSVSLAGGDYWMVSPVMVNS
RQSHWVVDASNSIVESVDYWLLGSDGSVQTAHSGYYAPYEFLFDYGRKVRLNMGTDYWLVTRLSSRYYSSAPELAIESEE
VHQLTNDRVAMAILICLGGLLFIALYNLLIYISIFDKAFLYYGLYVLTYFGGWALTFHLPAHLFNFHQLELHHLFFISLP
IFNIMFYKHFLQLPSYSPRLWRLSQYLLVACILALPTSIWLLPYTAIIASVLIMLWIALAITCGNVCLMKGFAPARYFIM
AFSCLLLPAVIILPGNMGITPDFIEHAEFATLLGGTVDALLLSLALANKLKLLAEERKAHIEELGIAWEKARLDGLTRVG
NRYAFDEYMNSQLTFADKVVQPTALVLLNVDSLKMVNDTLGHQEGDRLLQNLVQFLQATNIAHLKIYRISGDEFVLILPA
NGMGILTSSLKGLTAQFAAEGLKDCQFSFGFAINSDVAEPHEWLRCADSNLYQSRMEKRRQEFADTRAGEIVSI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=30.4878048780488, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 62785; Mature: 62653

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPNLQHFWCFLLLLWTFSPFAHSAEIALDSPYLFHADAKQLPPEHFNDVTQWMGPLEE
CCCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEECCHHHCCHHHHHHHHHHHCCHHH
ARSVSLAGGDYWMVSPVMVNSRQSHWVVDASNSIVESVDYWLLGSDGSVQTAHSGYYAPY
HCEEEECCCCEEEECCEEECCCCCCEEEECCHHHHHHCCEEEECCCCCCEECCCCCCCHH
EFLFDYGRKVRLNMGTDYWLVTRLSSRYYSSAPELAIESEEVHQLTNDRVAMAILICLGG
HHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHCCHHHHHHHHHHHH
LLFIALYNLLIYISIFDKAFLYYGLYVLTYFGGWALTFHLPAHLFNFHQLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLLVACILALPTSIWLLPYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFIMAFSCLLLPAVIILPGNMGITPDFIEHAEFATLLGGTVDA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHH
LLLSLALANKLKLLAEERKAHIEELGIAWEKARLDGLTRVGNRYAFDEYMNSQLTFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH
VQPTALVLLNVDSLKMVNDTLGHQEGDRLLQNLVQFLQATNIAHLKIYRISGDEFVLILP
CCCEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEC
ANGMGILTSSLKGLTAQFAAEGLKDCQFSFGFAINSDVAEPHEWLRCADSNLYQSRMEKR
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCEEECCCCCCHHHHHHHHCCHHHHHHHHHH
RQEFADTRAGEIVSI
HHHHHHCCCCCEECC
>Mature Secondary Structure 
SKPNLQHFWCFLLLLWTFSPFAHSAEIALDSPYLFHADAKQLPPEHFNDVTQWMGPLEE
CCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEECCHHHCCHHHHHHHHHHHCCHHH
ARSVSLAGGDYWMVSPVMVNSRQSHWVVDASNSIVESVDYWLLGSDGSVQTAHSGYYAPY
HCEEEECCCCEEEECCEEECCCCCCEEEECCHHHHHHCCEEEECCCCCCEECCCCCCCHH
EFLFDYGRKVRLNMGTDYWLVTRLSSRYYSSAPELAIESEEVHQLTNDRVAMAILICLGG
HHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHCCHHHHHHHHHHHH
LLFIALYNLLIYISIFDKAFLYYGLYVLTYFGGWALTFHLPAHLFNFHQLELHHLFFISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHH
PIFNIMFYKHFLQLPSYSPRLWRLSQYLLVACILALPTSIWLLPYTAIIASVLIMLWIAL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AITCGNVCLMKGFAPARYFIMAFSCLLLPAVIILPGNMGITPDFIEHAEFATLLGGTVDA
HHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHH
LLLSLALANKLKLLAEERKAHIEELGIAWEKARLDGLTRVGNRYAFDEYMNSQLTFADKV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHH
VQPTALVLLNVDSLKMVNDTLGHQEGDRLLQNLVQFLQATNIAHLKIYRISGDEFVLILP
CCCEEEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEEEC
ANGMGILTSSLKGLTAQFAAEGLKDCQFSFGFAINSDVAEPHEWLRCADSNLYQSRMEKR
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCEEECCCCCCHHHHHHHHCCHHHHHHHHHH
RQEFADTRAGEIVSI
HHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]