Click here to switch to the map view.

The map label for this gene is rsmB [H]

Identifier: 117921308

GI number: 117921308

Start: 3426533

End: 3427942

Strand: Direct

Name: rsmB [H]

Synonym: Shewana3_2867

Alternate gene names: 117921308

Gene position: 3426533-3427942 (Clockwise)

Preceding gene: 117921307

Following gene: 117921309

Centisome position: 68.91

GC content: 50.35

Gene sequence:

>1410_bases
ATGTCATTCGGCCGAGCCCCTTTTCAGGCTAACTTTATGGGCAATCCAAACGGCTTATCATCAGCAATCATGGCATCAAC
AGTGAATATCGAACCGCAAACCCTCGCGCAAAAACGCGGTTTAAGTTATGCCAATACCATTAAGTTATTGTTCGATGAGA
TTTTAAATACCAAGCAACCCGCCGACCGAGTGCTTGCGAACTACTTTAGGGAACATAAAAAGCACGGCTCAAAGGATCGC
AAAGTGATCCGCGAATCCTTATTTAGCCTGTTCCGTTGGTGGGGCTGGTTTAAAGCCACGGGCGATCATCAACAGGCGCC
CCAATTTTTTGCCATGCTCAGTGCGAGCGCCTTAATCGAAGCCCATCCATGGCAGGATATCGCCCAAGCTTGGCATGAAC
TCGCCCAATCGCCAGTTGATTATCAACAACTTCAATCTCTTAGCGTTAACAGATTAACGGATAAGTTAGCACTGGTACGG
CAGCAATTTCCCGAAGTGTCCTTCGAACTCACAGATTTATTACCCGAATGGTTTTGGCAGGTATGCCCAATTGCCGCAGA
GCTACGTCCAAATCTCATCGAAGCCATGTCTAGCCGCCCACCGATTTGGGGACGTGCGCAGGGAATAGACAGCCAAACGG
CAGTTAAACAACTGCAAGCGCTAGAGATTGATGCGAGCCTCAGCCCGTATTTTGCAGATGCCTTTAACCTTGGCACTAAG
AGCATGAATCTCAATGAAATATCACTCTATAAAGAGGGCAAAATTGAGATCCAGGATTTAGCCTCGCAAGTAATAGGTCA
AATTTGTGCACCAGATCCCTGGCAACACTGGTGGGATGCCTGCAGTGGCGCAGGCGGAAAAACCCTGCAATTGCGATCAC
TGATGCAAACGGCCGCGACTAAGCAAAACCCATTAGTAGGCTCAATTGTGTCGTCGGATATTCGCGCCCACGCCTTAGAA
GAACTCAGCAAACGTGCCCAGAGGGCAAGGTTTGATGGCATCAGCATTGCTCGCTGGCGCAGTGATGCGCTGCCGGTCGA
TGCCAACCATTTTGATGGGGTATTAGTCGACGCGCCCTGTAGCTGCACGGGCACCTGGCGCCGTAATCCCGATATGCGCT
GGCTCGACAGCCTCGATGCCGTCACTGATAAAGCCACTCTCCAGCTGGATATTTTAAGCCGCAGCAGCAAGGCGGTAAAA
CAGGGCGGAAGCTTAGTCTATGCCACTTGCTCATTGTCGCCTGTTGAAAATGAGCAAGTGGTTTCCGCCTTTTTACAACA
ACATCCCGAATTCAGCTTAGTGCCGATCCGCCACCCCTTTACCGGCGAACAAACAAAAATGTTGACCGTGTGGCCCTTCG
AGGCCAACACAGATGGAATGTTTGTGGCGCGCATGCAGCGCAATTATTAG

Upstream 100 bases:

>100_bases
CAACTCAGCATTGGGGCTTTTTTACTGCTAGCGATACGTAAAACTGCTACACTCTGCGCCACTTATTGATTTGCTTGGCC
ATATTCATCCCATCGGATGA

Downstream 100 bases:

>100_bases
GGCGTGTTGACGTTTCAGGGTTATTTTTTCAGCAGTTTGGCTGGCTTTTATGCAAGGCAAAGTCCGTGCAGTGTAGTTAT
TCTACATAAACGGACGATAA

Product: Fmu (Sun) domain-containing protein

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 469; Mature: 468

Protein sequence:

>469_residues
MSFGRAPFQANFMGNPNGLSSAIMASTVNIEPQTLAQKRGLSYANTIKLLFDEILNTKQPADRVLANYFREHKKHGSKDR
KVIRESLFSLFRWWGWFKATGDHQQAPQFFAMLSASALIEAHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTDKLALVR
QQFPEVSFELTDLLPEWFWQVCPIAAELRPNLIEAMSSRPPIWGRAQGIDSQTAVKQLQALEIDASLSPYFADAFNLGTK
SMNLNEISLYKEGKIEIQDLASQVIGQICAPDPWQHWWDACSGAGGKTLQLRSLMQTAATKQNPLVGSIVSSDIRAHALE
ELSKRAQRARFDGISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKATLQLDILSRSSKAVK
QGGSLVYATCSLSPVENEQVVSAFLQQHPEFSLVPIRHPFTGEQTKMLTVWPFEANTDGMFVARMQRNY

Sequences:

>Translated_469_residues
MSFGRAPFQANFMGNPNGLSSAIMASTVNIEPQTLAQKRGLSYANTIKLLFDEILNTKQPADRVLANYFREHKKHGSKDR
KVIRESLFSLFRWWGWFKATGDHQQAPQFFAMLSASALIEAHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTDKLALVR
QQFPEVSFELTDLLPEWFWQVCPIAAELRPNLIEAMSSRPPIWGRAQGIDSQTAVKQLQALEIDASLSPYFADAFNLGTK
SMNLNEISLYKEGKIEIQDLASQVIGQICAPDPWQHWWDACSGAGGKTLQLRSLMQTAATKQNPLVGSIVSSDIRAHALE
ELSKRAQRARFDGISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKATLQLDILSRSSKAVK
QGGSLVYATCSLSPVENEQVVSAFLQQHPEFSLVPIRHPFTGEQTKMLTVWPFEANTDGMFVARMQRNY
>Mature_468_residues
SFGRAPFQANFMGNPNGLSSAIMASTVNIEPQTLAQKRGLSYANTIKLLFDEILNTKQPADRVLANYFREHKKHGSKDRK
VIRESLFSLFRWWGWFKATGDHQQAPQFFAMLSASALIEAHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTDKLALVRQ
QFPEVSFELTDLLPEWFWQVCPIAAELRPNLIEAMSSRPPIWGRAQGIDSQTAVKQLQALEIDASLSPYFADAFNLGTKS
MNLNEISLYKEGKIEIQDLASQVIGQICAPDPWQHWWDACSGAGGKTLQLRSLMQTAATKQNPLVGSIVSSDIRAHALEE
LSKRAQRARFDGISIARWRSDALPVDANHFDGVLVDAPCSCTGTWRRNPDMRWLDSLDAVTDKATLQLDILSRSSKAVKQ
GGSLVYATCSLSPVENEQVVSAFLQQHPEFSLVPIRHPFTGEQTKMLTVWPFEANTDGMFVARMQRNY

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI39995082, Length=194, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI301336155, Length=194, Percent_Identity=28.8659793814433, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI76150625, Length=235, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI76150623, Length=235, Percent_Identity=27.6595744680851, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI32698918, Length=201, Percent_Identity=27.8606965174129, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI11545785, Length=210, Percent_Identity=28.0952380952381, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI2367212, Length=286, Percent_Identity=29.020979020979, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081985, Length=246, Percent_Identity=26.4227642276423, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17536757, Length=240, Percent_Identity=28.3333333333333, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI25143471, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6319447, Length=184, Percent_Identity=31.5217391304348, Blast_Score=78, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6324268, Length=219, Percent_Identity=24.6575342465753, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355201, Length=185, Percent_Identity=29.1891891891892, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI19920494, Length=172, Percent_Identity=33.1395348837209, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 52679; Mature: 52548

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFGRAPFQANFMGNPNGLSSAIMASTVNIEPQTLAQKRGLSYANTIKLLFDEILNTKQP
CCCCCCCCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
ADRVLANYFREHKKHGSKDRKVIRESLFSLFRWWGWFKATGDHQQAPQFFAMLSASALIE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AHPWQDIAQAWHELAQSPVDYQQLQSLSVNRLTDKLALVRQQFPEVSFELTDLLPEWFWQ
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VCPIAAELRPNLIEAMSSRPPIWGRAQGIDSQTAVKQLQALEIDASLSPYFADAFNLGTK
HCCHHHHHCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
SMNLNEISLYKEGKIEIQDLASQVIGQICAPDPWQHWWDACSGAGGKTLQLRSLMQTAAT
CCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
KQNPLVGSIVSSDIRAHALEELSKRAQRARFDGISIARWRSDALPVDANHFDGVLVDAPC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCC
SCTGTWRRNPDMRWLDSLDAVTDKATLQLDILSRSSKAVKQGGSLVYATCSLSPVENEQV
CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHCCHHHHHCCCCEEEEEECCCCCCHHHH
VSAFLQQHPEFSLVPIRHPFTGEQTKMLTVWPFEANTDGMFVARMQRNY
HHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCC
>Mature Secondary Structure 
SFGRAPFQANFMGNPNGLSSAIMASTVNIEPQTLAQKRGLSYANTIKLLFDEILNTKQP
CCCCCCCEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCH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HHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377; 9086272 [H]