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The map label for this gene is syd [H]

Identifier: 117921275

GI number: 117921275

Start: 3380840

End: 3381385

Strand: Reverse

Name: syd [H]

Synonym: Shewana3_2834

Alternate gene names: 117921275

Gene position: 3381385-3380840 (Counterclockwise)

Preceding gene: 117921277

Following gene: 117921272

Centisome position: 68.01

GC content: 48.35

Gene sequence:

>546_bases
TTGTGTATTCAAGGTGAGTTTGATGAAGCGTCCGATGAGGCGGTGTCTTGGCTCCCCGTTAAGCGTGAACACCTTGGCAG
TTTTGCGAATGTTGAACATGCGCTTGAGCTAACATTATGGCCTGATATCAATCACTTTTATGGTGAATATTTTGCGGCGC
CCGTGTTATTTGATTCACCATGGGGCACGGGCGAATTACTGCAGGTATGGAACGAGGCGGATTTTGATGCCCTGCAACAA
AATATCATCGGCCACTTAATGATGAAGCAAAAGCTCAAGCAACCAGCAACTTGGTTTATTGGTTTGCTGGATGAGGGCGA
TAAGATGCTAACTGTCGATAATGCCGATGGCAGTGTCTGGGGTGAAATTCCCGGCGAGCTTCCTTCTGCCCAATTGGCGC
CGAGTTTAGCTGAATTTATTGAGGCGTTATCGCCACGTATCGCGCCGCCCGTCAAACATGAAGAATTGCCTATGCCAGCG
CTTGAACATCCGGGGATTGTTGCCAGCTTTAAACGTATGTGGCACAACCTGATAGGTAAGCGTTAA

Upstream 100 bases:

>100_bases
TTGTCTGCCTGCTCTCGATAAATTTTTAGATAATTACCATCGATCCTACCTATCAACTTTAGGCGAATTACCACGATATT
ACCCGCAGGGCGAGCCATCT

Downstream 100 bases:

>100_bases
GCGCGGGGAAATGTGCAAAGGTCTCTTGAAAAGCCTCTTGCAAACCTGTTTCGCAAACTCGGCTCGGCAATTTTGCCTGC
CGAGTTTGCCATTCATCAAT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MCIQGEFDEASDEAVSWLPVKREHLGSFANVEHALELTLWPDINHFYGEYFAAPVLFDSPWGTGELLQVWNEADFDALQQ
NIIGHLMMKQKLKQPATWFIGLLDEGDKMLTVDNADGSVWGEIPGELPSAQLAPSLAEFIEALSPRIAPPVKHEELPMPA
LEHPGIVASFKRMWHNLIGKR

Sequences:

>Translated_181_residues
MCIQGEFDEASDEAVSWLPVKREHLGSFANVEHALELTLWPDINHFYGEYFAAPVLFDSPWGTGELLQVWNEADFDALQQ
NIIGHLMMKQKLKQPATWFIGLLDEGDKMLTVDNADGSVWGEIPGELPSAQLAPSLAEFIEALSPRIAPPVKHEELPMPA
LEHPGIVASFKRMWHNLIGKR
>Mature_181_residues
MCIQGEFDEASDEAVSWLPVKREHLGSFANVEHALELTLWPDINHFYGEYFAAPVLFDSPWGTGELLQVWNEADFDALQQ
NIIGHLMMKQKLKQPATWFIGLLDEGDKMLTVDNADGSVWGEIPGELPSAQLAPSLAEFIEALSPRIAPPVKHEELPMPA
LEHPGIVASFKRMWHNLIGKR

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family [H]

Homologues:

Organism=Escherichia coli, GI1789157, Length=136, Percent_Identity=35.2941176470588, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009948 [H]

Pfam domain/function: PF07348 Syd [H]

EC number: NA

Molecular weight: Translated: 20298; Mature: 20298

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCIQGEFDEASDEAVSWLPVKREHLGSFANVEHALELTLWPDINHFYGEYFAAPVLFDSP
CCCCCCCCCCCCHHHHHCCCCHHHCCCHHCHHHEEEEEECCCHHHHHHHHHHCCEEECCC
WGTGELLQVWNEADFDALQQNIIGHLMMKQKLKQPATWFIGLLDEGDKMLTVDNADGSVW
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEEECCCCCEE
GEIPGELPSAQLAPSLAEFIEALSPRIAPPVKHEELPMPALEHPGIVASFKRMWHNLIGK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
R
C
>Mature Secondary Structure
MCIQGEFDEASDEAVSWLPVKREHLGSFANVEHALELTLWPDINHFYGEYFAAPVLFDSP
CCCCCCCCCCCCHHHHHCCCCHHHCCCHHCHHHEEEEEECCCHHHHHHHHHHCCEEECCC
WGTGELLQVWNEADFDALQQNIIGHLMMKQKLKQPATWFIGLLDEGDKMLTVDNADGSVW
CCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEEECCCCCEE
GEIPGELPSAQLAPSLAEFIEALSPRIAPPVKHEELPMPALEHPGIVASFKRMWHNLIGK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA