| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is glnD [H]
Identifier: 117921258
GI number: 117921258
Start: 3363688
End: 3366273
Strand: Direct
Name: glnD [H]
Synonym: Shewana3_2817
Alternate gene names: 117921258
Gene position: 3363688-3366273 (Clockwise)
Preceding gene: 117921257
Following gene: 117921259
Centisome position: 67.65
GC content: 51.24
Gene sequence:
>2586_bases ATGAATACAGCTCTGCTAGCTAAACAATCATTAATCGAACAGAATCAAACGCTTTTAGCAAGATTCAAGGCCAAAACCCC GATTGAAGAGCTAGTGACGCAGCGCTGTCAGTTCGTCGATTCCCTCGTCAAACAGGCCTGGCAACAGCACGGTCTGGACC AATATCCTATCGCCCTGATCGCCGTTGGCGGCTATGGTCGCGGCGAGTTACATCCACACTCGGATGTCGATTTATTATTC CTGTTCGAAGGTGAGTTATCAAAGGCGGCTGAAACCGCGCTAAGCGAATTTATCGCCTTTTTATGGGACGCCAGCCTTGA GATTGGCCACAGTGTTCGCACCCTCAGCGATACCTTAAATCTGGGTCGAGAAGACATTACCATCGCCACTAACCTACTCG AAGCACGGTTGCTCTCAGGCCCAGAAACCCTGTTCGACCAGCTTTATGACGCCATCCGTCAGAGCGACTTTTGGACGTCC AGCCAGTTCTTTATCGCCAAACGTGATGAACAAACGGCCCGCCATGCTAAGGCGAGCGCCTTCGATCTAGAGCCCAACAT CAAAAGTTGCCCAGGCGGCCTGCGGGACATTCAAACCATCGCCTGGGTGGCGATGCGCCACTTTGGCGCCTCACGGTTAG AAGAATTGGTTCAATACGAATTTTTAGAACCTGCCGAGTTAGAAGAGCTGCTCGAATGTCAGCATTTTCTGTGGAAGCTG CGCTTTGCCCTGCATATGGCGGTCGGGCGCGATGAAAATCGCCTGCTGTTCGATGTCCAGCGCCAAGTGGCTGAGCTCAT GGGTTATGAGGACGCCACCCAACTTGCCGTTGAGCAGATGATGAAACGCTACTATCGCACGGTGCGCCGAGTGATGGAGC TGAACGAAATGCTGTTGCAGCTGTTTAAGCGGGCGACACTGGGCCAAACCAAGGCCTTAGAAATTCAAGCGATTGACAAT AACTACCAACGCCGCGGTGCCTTTATCGAGGCCCTAAGGGACGATTTATTCGATAGCGGCGAAGAAATTGTACGCCTCTT TGTCCATGTCGCTAAAAACTCCAATATCAAAGGCATTTATGCGCCGACACTGAGATCGCTAAGACGCGCACGCCGGGCAC AGCAGCAACCCTTGCAGGAAAATCCGCAGTGCCGCCAAGCTTTTATGGAAATCTTAAAACATCCTCGTGGCATCGCGGCC TTATCGCTGATGCATAAACACGGGGTGCTGTCGGCCTATTTGCCCGCTTGGCGCAATATCGAAGGCCAAATGCAGTTTGA CCTGTTCCATGCCTATACGGTGGATGAACACACCCACAGATTGCTGCTCAATATCGAGCGTTTCTCTCAGCCAGAGCAGA AAGAAGAGTTTCCTTTAGGCTCTGTGCTTATCAATCAGTTACCGAAAAAAGGTTTGTTGGTACTCGGCGCAATTTTCCAT GATATCGCTAAGGGCCGCGGCGGCGACCACAGCAAGCTTGGCTCAAGCGATGCCCTCGCCTTCTGTAAGCTCCATGGCTT GAACGACCACGATGGCCGCTTAGTCGCTTGGTTGGTCGAAAATCACTTAGTGATGTCGGTAACTGCCCAGCGCCGCGATA TTTCCGATCCCGATGTGGTGGCCGACTTTGCCAGCAAGGTGCGCGATGCGGTGCATTTAAGTTATTTATACTGCTTAACC GTCGCCGATATCTGCGCCACCAACGAGAAGACCTGGAACAACTGGAAAGGCTCACTGCTGCGCGACTTATATTTTTCCAC CCAAAGGGTACTGGCGCGGGGGAAAGAAAAACCCGTCGATATCCGCGCACGAGTGCGGGAATATCAAGCCAAGGCCAAGA AAGAGTTACTGCGCCGTGGCGTAAAAGAAAAAGAGTTAGATACTCTCTGGCAACGCTTTAAGGCCGACTACTTTTTACGC CACCAGCCGAATCAGGTTGCTTGGCATGCCGAAGCCATCCTTAAGCATAAACAGTTGGACGAGCCGCTAGTGCTGGTGTC TAAACACACGACGCGCGGCGGCACCGAACTCTTTGTCTACTGTCAGGACAGGCCTAAGCTGTTTGCCACCGTGATGGCGG TGCTCGATAATAAAAACATCAACGTCCACGACGCTAACATTATGACATCGAAGGATAATTACGCCCTCGACACCTTCGTT ATCCTCGAGCAAGACGGCGCGCCCGTGAGCCAGCTCTCACGCATTCAGAGTATCCGTAAAGCCCTTGAAAAGGCGCTTGC GAGCGATAATCCTAAACTGCCGCGTTTTAGAAAACTGTCACGTAAGATGAAACCTTTTAATGTTCCCACTCAGGTGAGTT TCCTTGAGAGTAACCGTCATGGTACAAGTATGATGGAACTCATCGCCTTGGATACGCCGGGATTATTAGCTAAAGTGGGC GATATTTTTTATCGCTGCAACACCACCTTGCTAGCCGCCAAGATCACCACCATTGGTGAGCGAGCAGAAGACTTTTTTAT TTTGCAAACCAATGATGGCTTGCAACTCAATGAAACCCAAGAGAATACGCTCAAGGAAGCCTTGATTAGCGCGCTGAGCG CCATCAACACAGAGTCAACCAATTAA
Upstream 100 bases:
>100_bases AGGAAGACTTCCCGCGTATCATTAATCACTAAGCGACATACTTAGTACGTTAGGATTCAGAGGATTACTGAACACCTAAC TCATCCAAACAAGGGACTCG
Downstream 100 bases:
>100_bases CCAAAACGGGAGAAGTAAATGGAGGCTTTACGCCAACGTATTGAGGCCGCATTTGAAGCGCGTGCCGACATCACACCAAG CACTGTTGACGCAAGCGTGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MNTALLAKQSLIEQNQTLLARFKAKTPIEELVTQRCQFVDSLVKQAWQQHGLDQYPIALIAVGGYGRGELHPHSDVDLLF LFEGELSKAAETALSEFIAFLWDASLEIGHSVRTLSDTLNLGREDITIATNLLEARLLSGPETLFDQLYDAIRQSDFWTS SQFFIAKRDEQTARHAKASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGASRLEELVQYEFLEPAELEELLECQHFLWKL RFALHMAVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGQTKALEIQAIDN NYQRRGAFIEALRDDLFDSGEEIVRLFVHVAKNSNIKGIYAPTLRSLRRARRAQQQPLQENPQCRQAFMEILKHPRGIAA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKEEFPLGSVLINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGSSDALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFASKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQLDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRHGTSMMELIALDTPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFILQTNDGLQLNETQENTLKEALISALSAINTESTN
Sequences:
>Translated_861_residues MNTALLAKQSLIEQNQTLLARFKAKTPIEELVTQRCQFVDSLVKQAWQQHGLDQYPIALIAVGGYGRGELHPHSDVDLLF LFEGELSKAAETALSEFIAFLWDASLEIGHSVRTLSDTLNLGREDITIATNLLEARLLSGPETLFDQLYDAIRQSDFWTS SQFFIAKRDEQTARHAKASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGASRLEELVQYEFLEPAELEELLECQHFLWKL RFALHMAVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGQTKALEIQAIDN NYQRRGAFIEALRDDLFDSGEEIVRLFVHVAKNSNIKGIYAPTLRSLRRARRAQQQPLQENPQCRQAFMEILKHPRGIAA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKEEFPLGSVLINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGSSDALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFASKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQLDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRHGTSMMELIALDTPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFILQTNDGLQLNETQENTLKEALISALSAINTESTN >Mature_861_residues MNTALLAKQSLIEQNQTLLARFKAKTPIEELVTQRCQFVDSLVKQAWQQHGLDQYPIALIAVGGYGRGELHPHSDVDLLF LFEGELSKAAETALSEFIAFLWDASLEIGHSVRTLSDTLNLGREDITIATNLLEARLLSGPETLFDQLYDAIRQSDFWTS SQFFIAKRDEQTARHAKASAFDLEPNIKSCPGGLRDIQTIAWVAMRHFGASRLEELVQYEFLEPAELEELLECQHFLWKL RFALHMAVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQLFKRATLGQTKALEIQAIDN NYQRRGAFIEALRDDLFDSGEEIVRLFVHVAKNSNIKGIYAPTLRSLRRARRAQQQPLQENPQCRQAFMEILKHPRGIAA LSLMHKHGVLSAYLPAWRNIEGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKEEFPLGSVLINQLPKKGLLVLGAIFH DIAKGRGGDHSKLGSSDALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVVADFASKVRDAVHLSYLYCLT VADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVDIRARVREYQAKAKKELLRRGVKEKELDTLWQRFKADYFLR HQPNQVAWHAEAILKHKQLDEPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV ILEQDGAPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRHGTSMMELIALDTPGLLAKVG DIFYRCNTTLLAAKITTIGERAEDFFILQTNDGLQLNETQENTLKEALISALSAINTESTN
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=837, Percent_Identity=49.5818399044205, Blast_Score=810, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 98199; Mature: 98199
Theoretical pI: Translated: 7.57; Mature: 7.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTALLAKQSLIEQNQTLLARFKAKTPIEELVTQRCQFVDSLVKQAWQQHGLDQYPIALI CCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AVGGYGRGELHPHSDVDLLFLFEGELSKAAETALSEFIAFLWDASLEIGHSVRTLSDTLN EECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHH LGREDITIATNLLEARLLSGPETLFDQLYDAIRQSDFWTSSQFFIAKRDEQTARHAKASA CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCC FDLEPNIKSCPGGLRDIQTIAWVAMRHFGASRLEELVQYEFLEPAELEELLECQHFLWKL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RFALHMAVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQ HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGQTKALEIQAIDNNYQRRGAFIEALRDDLFDSGEEIVRLFVHVAKNSNIKGIY HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEE APTLRSLRRARRAQQQPLQENPQCRQAFMEILKHPRGIAALSLMHKHGVLSAYLPAWRNI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCC EGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKEEFPLGSVLINQLPKKGLLVLGAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGSSDALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCCCHHHHHEECCCCCCCCCEEEEEECCCEEEEEEHHHCCCCCHHHH ADFASKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGVKEKELDTLWQRFKADYFLRHQPNQVAWHAEAILKHKQLD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHCCC EPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEEEEE ILEQDGAPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRH EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEHHHHCCCC GTSMMELIALDTPGLLAKVGDIFYRCNTTLLAAKITTIGERAEDFFILQTNDGLQLNETQ CHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCEECCCH ENTLKEALISALSAINTESTN HHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNTALLAKQSLIEQNQTLLARFKAKTPIEELVTQRCQFVDSLVKQAWQQHGLDQYPIALI CCCHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE AVGGYGRGELHPHSDVDLLFLFEGELSKAAETALSEFIAFLWDASLEIGHSVRTLSDTLN EECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHH LGREDITIATNLLEARLLSGPETLFDQLYDAIRQSDFWTSSQFFIAKRDEQTARHAKASA CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCC FDLEPNIKSCPGGLRDIQTIAWVAMRHFGASRLEELVQYEFLEPAELEELLECQHFLWKL CCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH RFALHMAVGRDENRLLFDVQRQVAELMGYEDATQLAVEQMMKRYYRTVRRVMELNEMLLQ HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFKRATLGQTKALEIQAIDNNYQRRGAFIEALRDDLFDSGEEIVRLFVHVAKNSNIKGIY HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEE APTLRSLRRARRAQQQPLQENPQCRQAFMEILKHPRGIAALSLMHKHGVLSAYLPAWRNI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCC EGQMQFDLFHAYTVDEHTHRLLLNIERFSQPEQKEEFPLGSVLINQLPKKGLLVLGAIFH CCCEEEEEEEEEECCCHHHHHHEEHHHHCCCCHHHHCCHHHHHHHHCCCCHHHHHHHHHH DIAKGRGGDHSKLGSSDALAFCKLHGLNDHDGRLVAWLVENHLVMSVTAQRRDISDPDVV HHHCCCCCCCCCCCCCCHHHHHEECCCCCCCCCEEEEEECCCEEEEEEHHHCCCCCHHHH ADFASKVRDAVHLSYLYCLTVADICATNEKTWNNWKGSLLRDLYFSTQRVLARGKEKPVD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH IRARVREYQAKAKKELLRRGVKEKELDTLWQRFKADYFLRHQPNQVAWHAEAILKHKQLD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHEECCCCCHHHHHHHHHHHHCCC EPLVLVSKHTTRGGTELFVYCQDRPKLFATVMAVLDNKNINVHDANIMTSKDNYALDTFV CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEECCEEEECCCCCEEEEEE ILEQDGAPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRH EEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEHHHHCCCC GTSMMELIALDTPGLLAKVGDIFYRCNTTLLAAKITTIGERAEDFFILQTNDGLQLNETQ CHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCEECCCH ENTLKEALISALSAINTESTN HHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]